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rifcsplowo2_01_scaffold_7586

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_7586_1
unknown

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comp(3..233)
DNA (231bp) protein (77aa)

This feature has no annotations

rifcsplowo2_01_scaffold_7586_2
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(454..660)
DNA (207bp) protein (69aa)
hpyA1-1; histone A1 id=5049703 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
archaeal histone Tax=CG_Pacearch_04
Histone, HmtA
rifcsplowo2_01_scaffold_7586_3
unknown

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774..1187
DNA (414bp) protein (138aa)

This feature has no annotations

rifcsplowo2_01_scaffold_7586_4
unknown

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1323..2288
DNA (966bp) protein (322aa)
50S ribosomal protein L3 n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXT2_FERPA Tax=AR20
50S ribosomal protein L3 n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXT2_FERPA id=5103252 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L3
rifcsplowo2_01_scaffold_7586_5

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2285..3094
DNA (810bp) protein (270aa)
50S ribosomal protein L4 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ id=5103253 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS11732.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
rifcsplowo2_01_scaffold_7586_6
CG_Woesearch_02, Woesearchaeota, Archaea

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3096..3356
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003624D48
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=CG_Woesearch_02
50S ribosomal protein L23P
rifcsplowo2_01_scaffold_7586_7
AR17, Woesearchaeaota, DPANN, Archaea

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3358..4080
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003710343
LSU ribosomal protein l2p; K02886 large subunit ribosomal protein L2 Tax=AR17
rpl2p; 50S ribosomal protein L2
rifcsplowo2_01_scaffold_7586_8

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4082..4480
DNA (399bp) protein (133aa)
30S ribosomal protein S19P n=1 Tax=Pyrococcus sp. ST04 RepID=I3RGB2_9EURY
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19
rifcsplowo2_01_scaffold_7586_9

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4482..4958
DNA (477bp) protein (159aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 id=5042305 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl22p; 50S ribosomal protein L22P
rifcsplowo2_01_scaffold_7586_10

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4924..5670
DNA (747bp) protein (249aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GQL3_9ZZZZ
30S ribosomal protein S3 {ECO:0000313|EMBL:AGT99858.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
30S ribosomal protein S3
rifcsplowo2_01_scaffold_7586_11

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5648..5866
DNA (219bp) protein (73aa)
50S ribosomal protein L29P n=1 Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8AM64_METOI
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
50S ribosomal protein L29
rifcsplowo2_01_scaffold_7586_12
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

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5863..6168
DNA (306bp) protein (102aa)
Protein translation factor SUI1 homolog n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=SUI1_ARCFU id=5103260 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
translation initiation factor Sui1; K03113 translation initiation factor 1 Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
Protein translation factor SUI1-like protein
rifcsplowo2_01_scaffold_7586_13
AR6, Pacearchaeaota, DPANN, Archaea

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6170..6430
DNA (261bp) protein (87aa)
Ribonuclease P, Rpp29; K03538 ribonuclease P protein subunit POP4 [EC:3.1.26.5] Tax=AR6
Ribonuclease P protein component 1 n=1 Tax=Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) RepID=C9RET8_METVM
ribonuclease P protein component 1
rifcsplowo2_01_scaffold_7586_14

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6427..6765
DNA (339bp) protein (113aa)
30S ribosomal protein S17P n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VYH7_9EURY id=5103261 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12347.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17P
rifcsplowo2_01_scaffold_7586_15
CG_Woesearch_02, Woesearchaeota, Archaea

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6746..7147
DNA (402bp) protein (134aa)
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=CG_Woesearch_02
50S ribosomal protein L14P id=5800053 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L14P
rifcsplowo2_01_scaffold_7586_16

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7149..7529
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24P
rifcsplowo2_01_scaffold_7586_17
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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7531..8247
DNA (717bp) protein (239aa)
30S ribosomal protein S4e n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZD1_METFV id=5103264 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
SSU ribosomal protein s4e; K02987 small subunit ribosomal protein S4e Tax=RBG_13_Woesearchaeota_36_6_curated
30S ribosomal protein S4e
rifcsplowo2_01_scaffold_7586_18

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8252..8758
DNA (507bp) protein (169aa)
50S ribosomal protein L5 n=2 Tax=Methanotorris RepID=F6BD87_METIK id=5103265 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5
rifcsplowo2_01_scaffold_7586_19

Not on your lists

8760..8990
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5046853 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54246.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
SSU ribosomal protein S14P
rifcsplowo2_01_scaffold_7586_20

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8999..9391
DNA (393bp) protein (131aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 id=5046854 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
30S ribosomal protein S8
rifcsplowo2_01_scaffold_7586_21

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9393..9935
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=5 Tax=Thermococcus RepID=RL6_PYRKO id=5103268 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L6
50S ribosomal protein L6P, large subunit ribosomal protein L6 {ECO:0000313|EMBL:AJS11866.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rifcsplowo2_01_scaffold_7586_22

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9937..10521
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037197A6
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO51172.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
50S ribosomal protein L32e
rifcsplowo2_01_scaffold_7586_23
unknown

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10518..10979
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000381F97D
50S ribosomal protein L19e n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZD7_METFV Tax=AR20
50S ribosomal protein L19e
rifcsplowo2_01_scaffold_7586_24
unknown

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10966..11556
DNA (591bp) protein (197aa)
LSU ribosomal protein L18P n=1 Tax=nanoarchaeote Nst1 RepID=R1G9E4_9ARCH id=5103271 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
LSU ribosomal protein L18P n=1 Tax=nanoarchaeote Nst1 RepID=R1G9E4_9ARCH Tax=AR20
rpl18p; 50S ribosomal protein L18
rifcsplowo2_01_scaffold_7586_25
CG_Woesearch_02, Woesearchaeota, Archaea

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11546..12328
DNA (783bp) protein (261aa)
30S ribosomal protein S5 n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036370A2
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 Tax=CG_Woesearch_02
30S ribosomal protein S5
rifcsplowo2_01_scaffold_7586_26

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12325..12801
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003719CE9
50S ribosomal protein L30P
50S ribosomal protein L30P {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00081760}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_7586_27

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12802..13227
DNA (426bp) protein (142aa)
50S ribosomal protein L27; K02876 large subunit ribosomal protein L15 id=5046862 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
50S ribosomal protein L15P
rifcsplowo2_01_scaffold_7586_28

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13218..14597
DNA (1380bp) protein (460aa)
Protein translocase subunit SecY n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TB98_METSL id=5103275 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Protein translocase subunit SecY {ECO:0000256|RuleBase:RU000537}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
Protein translocase subunit SecY
rifcsplowo2_01_scaffold_7586_29

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14599..15039
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VRS7_METIM id=5103276 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:KHO48830.1}; TaxID=1579368 species="Archaea.;" source="archaeon GW2011_AR6.;"
hypothetical protein
rifcsplowo2_01_scaffold_7586_30
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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15041..15304
DNA (264bp) protein (88aa)
50S ribosomal protein L34e n=1 Tax=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) RepID=RL34_THEGJ
ribosomal protein L34e Rpl34e; K02915 large subunit ribosomal protein L34e Tax=RBG_13_Woesearchaeota_36_6_curated
rpl34e; 50S ribosomal protein L34e
Displaying items 1-30 of 42 in total

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