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rifcsplowo2_01_scaffold_6657

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_6657_1
unknown

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3..641
DNA (639bp) protein (213aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6657_2
R_Peregrinibacteria_39_12, Peregrinibacteria, Bacteria

Not on your lists

comp(499..1686)
DNA (1188bp) protein (396aa)
NAD(P)-binding Rossmann-like domain protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VVA5_9EURY
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_Peregrinibacteria_39_12_curated
protoporphyrinogen oxidase
rifcsplowo2_01_scaffold_6657_3
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

1980..2279
DNA (300bp) protein (100aa)
hypothetical protein Tax=AR11
id=5046763 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_6657_4
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

2336..3421
DNA (1086bp) protein (362aa)
DNA repair and recombination protein RadA; K04483 DNA repair protein RadA id=5048364 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA repair and recombination protein RadA; K04483 DNA repair protein RadA Tax=AR4
DNA repair and recombination protein RadA
rifcsplowo2_01_scaffold_6657_5
GWA1_OP11_42_6_partial, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

3689..4096
DNA (408bp) protein (136aa)
Deoxyribonuclease/rho motif-related TRAM {ECO:0000313|EMBL:KKS64513.1}; TaxID=1618420 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA1_42_6.;"
Putative RNA-binding protein, contains TRAM domain id=5800293 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsplowo2_01_scaffold_6657_6
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


4450..5052
DNA (603bp) protein (201aa)
30S ribosomal protein S2 {ECO:0000313|EMBL:KKR78533.1}; TaxID=1618734 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_40_9.;"
30S ribosomal protein S2 id=5799985 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S2
rifcsplowo2_01_scaffold_6657_7
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(5280..6035)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037A6C08
transcriptional regulator TrmB Tax=RBG_13_Pacearchaeota_36_9_curated
transcriptional regulator TrmB
rifcsplowo2_01_scaffold_6657_8
GWC2_OD1_ACD81_39_22, Wolfebacteria, Parcubacteria, Bacteria

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6103..7200
DNA (1098bp) protein (366aa)
Extracellular ligand-binding receptor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH32_9FIRM id=133398 bin=ACD81 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1 rbh
Extracellular ligand-binding receptor Tax=GWC2_OD1_ACD81_39_22
extracellular ligand-binding receptor
rifcsplowo2_01_scaffold_6657_9

Not on your lists

comp(7208..7843)
DNA (636bp) protein (212aa)
DNA repair and recombination protein RadB n=1 Tax=nanoarchaeote Nst1 RepID=R1G2W9_9ARCH
DNA repair and recombination protein RadB {ECO:0000256|HAMAP-Rule:MF_00350}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
radB; DNA repair and recombination protein RadB
rifcsplowo2_01_scaffold_6657_10
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

7925..9397
DNA (1473bp) protein (491aa)
hypothetical protein
Uncharacterized protein Tax=CG_Woesearch_02
Uncharacterized protein id=5050179 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_6657_11
CG_Woesearch_02, Woesearchaeota, Archaea

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9394..10752
DNA (1359bp) protein (453aa)
hypothetical protein
id=5050180 Tax=CG_Woesearch_02
id=5050180 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_6657_12
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

10731..11360
DNA (630bp) protein (210aa)
Tax=CG_Woesearch_03
rifcsplowo2_01_scaffold_6657_13
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

11353..13479
DNA (2127bp) protein (709aa)
hypothetical protein Tax=CG_Woesearch_03
Hypothetical cytosolic protein id=4530970 bin=GWC2_Deltaproteobacteria_55_46 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
hypothetical protein
rifcsplowo2_01_scaffold_6657_14

Not on your lists

13476..14867
DNA (1392bp) protein (464aa)
hypothetical protein id=5041885 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47313.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
rifcsplowo2_01_scaffold_6657_15

Not on your lists

comp(14860..15234)
DNA (375bp) protein (125aa)
transcriptional regulator; K03627 putative transcription factor id=5050186 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO44967.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsplowo2_01_scaffold_6657_16

Not on your lists

15420..16508
DNA (1089bp) protein (363aa)
Antibiotic transport system ATP-binding protein {ECO:0000313|EMBL:KHO51088.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein id=5041889 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
ABC-type multidrug transport system, ATP-ase compoment
rifcsplowo2_01_scaffold_6657_17

Not on your lists

16505..18253
DNA (1749bp) protein (583aa)
ABC transporter; K09686 antibiotic transport system permease protein id=5041890 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Antibiotic transport system permease protein {ECO:0000313|EMBL:KHO47318.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
ABC-2 type transporter
rifcsplowo2_01_scaffold_6657_18
unknown

Not on your lists

18255..19025
DNA (771bp) protein (257aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6657_19
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18952..19548)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3B7E
Uncharacterized protein {ECO:0000313|EMBL:KGS08074.1}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" sourc
hypothetical protein
rifcsplowo2_01_scaffold_6657_20
unknown

Not on your lists

comp(19535..19930)
DNA (396bp) protein (132aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6657_21
Bacillus halodurans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19985..20422
DNA (438bp) protein (146aa)
BH2907 protein n=1 Tax=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) RepID=Q9K8U5_BACHD
hypothetical protein
BH2907 protein {ECO:0000313|EMBL:BAB06626.1}; TaxID=272558 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / F
rifcsplowo2_01_scaffold_6657_22
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

20556..21770
DNA (1215bp) protein (405aa)
cysS; Cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=CG_Woesearch_02
cysS; Cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] id=5048461 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
cysS; cysteinyl-tRNA synthetase
rifcsplowo2_01_scaffold_6657_23
Pontibacillus litoralis, Pontibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21754..21939
DNA (186bp) protein (62aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase id=2063286 bin=GWB2_Clostridiales_37_7 species=Clostridium carboxidivorans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
rifcsplowo2_01_scaffold_6657_24
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

21911..22804
DNA (894bp) protein (298aa)
315aa long hypothetical proliferating-cell nucleolar protein p120 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O50082_PYRHO
proliferating-cell nucleolar protein p120 Tax=RBG_13_Bathyarchaeota_52_12_curated
proliferating-cell nucleolar protein p120
rifcsplowo2_01_scaffold_6657_25
unknown

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22801..23295
DNA (495bp) protein (165aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6657_26
unknown

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23276..23881
DNA (606bp) protein (202aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6657_27
unknown

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comp(23878..24312)
DNA (435bp) protein (145aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6657_28
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24462..25112
DNA (651bp) protein (217aa)
Metal dependent phosphohydrolase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2V0_PALPW
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ADQ79044.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter prop
rifcsplowo2_01_scaffold_6657_29
unknown

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comp(25109..25507)
DNA (399bp) protein (133aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6657_30

Not on your lists


25729..26574
DNA (846bp) protein (282aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=5048462 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02005}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02005};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02005}; TaxID=1579365 species="Archaea.;" source=
Valine-tRNA ligase
Displaying 30 items

View Taxonomy