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rifcsplowo2_01_scaffold_24350

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_24350_1
Parcubacteria bacterium GW2011_GWA2_40_8, Parcubacteria, Bacteria

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comp(3..305)
DNA (303bp) protein (101aa)
Cytidine deaminase n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6Q1H2_9FIRM
Cytidine deaminase {ECO:0000313|EMBL:KKR77990.1}; TaxID=1618818 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_8.;"
hypothetical protein
rifcsplowo2_01_scaffold_24350_2

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422..1042
DNA (621bp) protein (207aa)
KH domain protein; K06961 ribosomal RNA assembly protein id=5048469 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribosomal RNA assembly protein {ECO:0000313|EMBL:KHO45503.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
putative RNA-processing protein
rifcsplowo2_01_scaffold_24350_3

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1003..2679
DNA (1677bp) protein (559aa)
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3); K03167 DNA topoisomerase VI subunit B [EC:5.99.1.3] id=5048468 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Type 2 DNA topoisomerase 6 subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00322};; Type II DNA topoisomerase VI subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; TaxID=
DNA topoisomerase VI, subunit B
rifcsplowo2_01_scaffold_24350_4
AR9, Woesearchaeaota, DPANN, Archaea

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2666..3751
DNA (1086bp) protein (362aa)
DNA topoisomerase VI subunit A (EC:5.99.1.3); K03166 DNA topoisomerase VI subunit A [EC:5.99.1.3] Tax=AR9
DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Candidatus Parvarchaeum RepID=D2EGK9_9EURY id=5103234 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA topoisomerase ATP-hydrolyzing
rifcsplowo2_01_scaffold_24350_5

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comp(3926..4486)
DNA (561bp) protein (187aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO49524.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
hypothetical protein id=5049606 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsplowo2_01_scaffold_24350_6
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(4518..4715)
DNA (198bp) protein (66aa)
DNA-directed RNA polymerase subunit N (EC:2.7.7.6); K03058 DNA-directed RNA polymerase subunit N [EC:2.7.7.6] Tax=RBG_13_Woesearchaeota_36_6_curated
DNA-directed RNA polymerase subunit N (EC:2.7.7.6); K03058 DNA-directed RNA polymerase subunit N [EC:2.7.7.6] id=5045700 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA-directed RNA polymerase subunit N
rifcsplowo2_01_scaffold_24350_7
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(4730..5125)
DNA (396bp) protein (132aa)
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=CG_Woesearch_02
SSU ribosomal protein S9P id=5799887 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S9
rifcsplowo2_01_scaffold_24350_8
unknown

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comp(5127..5228)
DNA (102bp) protein (34aa)

This feature has no annotations

rifcsplowo2_01_scaffold_24350_9

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comp(5225..5653)
DNA (429bp) protein (143aa)
Marine sediment metagenome DNA, contig: S01H1_S00916 {ECO:0000313|EMBL:GAF93287.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
LSU ribosomal protein L13P id=5799888 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L13P
rifcsplowo2_01_scaffold_24350_10
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(5655..6017)
DNA (363bp) protein (121aa)
50S ribosomal protein L18e n=1 Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=A3DMQ7_STAMF
50S ribosomal protein L18e; K02883 large subunit ribosomal protein L18e Tax=RBG_13_Woesearchaeota_36_6_curated
50S ribosomal protein L18e
rifcsplowo2_01_scaffold_24350_11
AR15, Woesearchaeaota, DPANN, Archaea

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comp(6277..7044)
DNA (768bp) protein (256aa)
DNA-directed RNA polymerase subunit D id=5799890 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase subunit D Tax=AR15
DNA-directed RNA polymerase subunit D
rifcsplowo2_01_scaffold_24350_12
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(7041..7433)
DNA (393bp) protein (131aa)
rps11p; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=CG_Woesearch_01
30S ribosomal protein S11 id=5799891 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps11p; 30S ribosomal protein S11P
rifcsplowo2_01_scaffold_24350_13
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(7433..8062)
DNA (630bp) protein (210aa)
30S ribosomal protein S4 Tax=RBG_13_Woesearchaeota_36_6_curated
rps4p; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 id=5051520 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
30S ribosomal protein S4
rifcsplowo2_01_scaffold_24350_14
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(8075..8491)
DNA (417bp) protein (139aa)
rps13p; 30S ribosomal protein S13p; K02952 small subunit ribosomal protein S13 Tax=CG_Woesearch_02
30S ribosomal protein S13P id=5799893 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S13
rifcsplowo2_01_scaffold_24350_15
unknown

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comp(8607..8924)
DNA (318bp) protein (106aa)

This feature has no annotations

rifcsplowo2_01_scaffold_24350_16
unknown

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9238..9372
DNA (135bp) protein (45aa)

This feature has no annotations

rifcsplowo2_01_scaffold_24350_17
unknown

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9471..10157
DNA (687bp) protein (229aa)

This feature has no annotations

Displaying 17 items

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