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rifcsplowo2_01_scaffold_5828

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_5828_1

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comp(1..1293)
DNA (1293bp) protein (431aa)
mcm; DNA replication initiator protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] id=5046315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA replication initiator protein, replicative DNA helicase Mcm {ECO:0000313|EMBL:KHO46116.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO46116.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.
DNA replication initiator Cdc21/Cdc54
rifcsplowo2_01_scaffold_5828_2
unknown

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comp(1385..1834)
DNA (450bp) protein (150aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5828_3

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comp(1836..2405)
DNA (570bp) protein (190aa)
tbpE; transcription factor; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5046314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
TATA-box-binding protein
rifcsplowo2_01_scaffold_5828_4
unknown

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2634..3491
DNA (858bp) protein (286aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5828_5
unknown

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3498..3902
DNA (405bp) protein (135aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5828_6

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comp(3865..4629)
DNA (765bp) protein (255aa)
Putative uncharacterized protein id=5042325 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46823.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsplowo2_01_scaffold_5828_7
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(4634..6040)
DNA (1407bp) protein (469aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=CG_Woesearch_02
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5042324 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein translocase subunit SecY
rifcsplowo2_01_scaffold_5828_8

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comp(6037..6480)
DNA (444bp) protein (148aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=5042323 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl15p; 50S ribosomal protein L15P
rifcsplowo2_01_scaffold_5828_9
AR11, Woesearchaeaota, DPANN, Archaea

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comp(6481..6822)
DNA (342bp) protein (114aa)
ribosomal protein L30P; K02907 large subunit ribosomal protein L30 Tax=AR11
50S ribosomal protein L30P
rpl30p; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 id=5042322 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_5828_10

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comp(6819..7628)
DNA (810bp) protein (270aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5042321 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S5P, small subunit ribosomal protein S5 {ECO:0000313|EMBL:KHO46819.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
30S ribosomal protein S5
rifcsplowo2_01_scaffold_5828_11

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comp(7625..8200)
DNA (576bp) protein (192aa)
50S ribosomal protein L18P n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD81_METIK
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L18
rifcsplowo2_01_scaffold_5828_12

Not on your lists

comp(8201..8644)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000381F97D
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
rpl19e; 50S ribosomal protein L19e
rifcsplowo2_01_scaffold_5828_13
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(8644..9204)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037197A6
ribosomal protein L32e; K02912 large subunit ribosomal protein L32e Tax=AR11
ribosomal protein L32e
rifcsplowo2_01_scaffold_5828_14

Not on your lists


comp(9198..9740)
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=5 Tax=Thermococcus RepID=RL6_PYRKO id=5103268 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Large subunit ribosomal protein L6 {ECO:0000313|EMBL:KHO51229.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
50S ribosomal protein L6
rifcsplowo2_01_scaffold_5828_15

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comp(9740..10129)
DNA (390bp) protein (130aa)
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=5042316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
30S ribosomal protein S8
rifcsplowo2_01_scaffold_5828_16
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(10148..10378)
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5042315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
SSU ribosomal protein S14P
rifcsplowo2_01_scaffold_5828_17

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comp(10395..10910)
DNA (516bp) protein (172aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
rifcsplowo2_01_scaffold_5828_18

Not on your lists

comp(10912..11592)
DNA (681bp) protein (227aa)
30S ribosomal protein S4e
rps4e; 30S ribosomal protein S4e; K02987 small subunit ribosomal protein S4e id=5041771 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
rifcsplowo2_01_scaffold_5828_19
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(11589..11963)
DNA (375bp) protein (125aa)
LSU ribosomal protein l24p; K02895 large subunit ribosomal protein L24 Tax=CG_Woesearch_01
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 id=5046850 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L24P
rifcsplowo2_01_scaffold_5828_20
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(11960..12361)
DNA (402bp) protein (134aa)
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=CG_Woesearch_02
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 id=5041769 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L14P
rifcsplowo2_01_scaffold_5828_21

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comp(12348..12695)
DNA (348bp) protein (116aa)
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12457.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps17p; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 id=5042310 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rps17p; 30S ribosomal protein S17
rifcsplowo2_01_scaffold_5828_22
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(12697..12948)
DNA (252bp) protein (84aa)
ribonuclease P protein component 1 (EC:3.1.26.5)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|H
Ribonuclease P protein component 1 n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KSU3_ARCVS
rifcsplowo2_01_scaffold_5828_23

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comp(12945..13250)
DNA (306bp) protein (102aa)
translation initiation factor 1 (eIF-1/SUI1); K03113 translation initiation factor 1 id=5042308 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein translation factor SUI1 homolog {ECO:0000256|HAMAP-Rule:MF_00604, ECO:0000256|PIRNR:PIRNR037511}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Translation initiation factor SUI1-related protein
rifcsplowo2_01_scaffold_5828_24

Not on your lists


comp(13247..13522)
DNA (276bp) protein (92aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 id=5042307 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L29
rifcsplowo2_01_scaffold_5828_25

Not on your lists


comp(13519..14220)
DNA (702bp) protein (234aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GQQ3_9ZZZZ
Marine sediment metagenome DNA, contig: S01H1_S22596 {ECO:0000313|EMBL:GAG25521.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
30S ribosomal protein S3
rifcsplowo2_01_scaffold_5828_26
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(14217..14717)
DNA (501bp) protein (167aa)
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=CG_Woesearch_02
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 id=5042305 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
LSU ribosomal protein L17e (L22p)
rifcsplowo2_01_scaffold_5828_27
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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comp(14718..15095)
DNA (378bp) protein (126aa)
30S ribosomal protein S19P n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RE62_ARCPA
30S ribosomal protein S19
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=572546 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus prof
rifcsplowo2_01_scaffold_5828_28

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comp(15102..15815)
DNA (714bp) protein (238aa)
Marine sediment metagenome DNA, contig: S01H1_S09055 {ECO:0000313|EMBL:GAG01105.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 id=5042303 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L2
rifcsplowo2_01_scaffold_5828_29

Not on your lists


comp(15817..16107)
DNA (291bp) protein (97aa)
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 id=5042302 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Large subunit ribosomal protein L23 {ECO:0000313|EMBL:KHO46800.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L23P
rifcsplowo2_01_scaffold_5828_30

Not on your lists


comp(16109..16921)
DNA (813bp) protein (271aa)
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS12167.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl4lp; 50S ribosomal protein L4P; K02930 large subunit ribosomal protein L4e id=5042301 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L4
Displaying items 1-30 of 33 in total

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