ggKbase home page

rifcsplowo2_01_scaffold_45928

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_45928_1

Not on your lists


176..706
DNA (531bp) protein (177aa)
Marine sediment metagenome DNA, contig: S01H1_L06460 {ECO:0000313|EMBL:GAF76521.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
30S ribosomal protein S13P id=5799893 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps13p; 30S ribosomal protein S13
rifcsplowo2_01_scaffold_45928_2
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists


713..1282
DNA (570bp) protein (190aa)
30S ribosomal protein S4 n=4 Tax=Euryarchaeota RepID=RS4_PYRAB
30S ribosomal protein S4 Tax=RBG_13_Woesearchaeota_36_6_curated
rps4p; 30S ribosomal protein S4
rifcsplowo2_01_scaffold_45928_3

Not on your lists


1269..1667
DNA (399bp) protein (133aa)
Marine sediment metagenome DNA, contig: S01H4_S05167 {ECO:0000313|EMBL:GAH02536.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
30S ribosomal protein S11 id=5799891 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps11p; 30S ribosomal protein S11
rifcsplowo2_01_scaffold_45928_4
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

1664..2452
DNA (789bp) protein (263aa)
RNA polymerase insert; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=AR9
DNA-directed RNA polymerase subunit D n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I735_METCZ id=5103687 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase subunit D
rifcsplowo2_01_scaffold_45928_5
unknown

Not on your lists

2449..2685
DNA (237bp) protein (79aa)

This feature has no annotations

rifcsplowo2_01_scaffold_45928_6
Staphylothermus marinus, Staphylothermus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists


2697..3059
DNA (363bp) protein (121aa)
50S ribosomal protein L18e n=1 Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=A3DMQ7_STAMF
50S ribosomal protein L18
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329}; TaxID=399550 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Staphylothermus.;" source="Staphylother
rifcsplowo2_01_scaffold_45928_7

Not on your lists


3056..3469
DNA (414bp) protein (138aa)
50S ribosomal protein L13P n=10 Tax=Thermococcus RepID=RL13_PYRKO id=5103680 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Marine sediment metagenome DNA, contig: S01H1_S00916 {ECO:0000313|EMBL:GAF93287.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
50S ribosomal protein L13P
rifcsplowo2_01_scaffold_45928_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


3463..3864
DNA (402bp) protein (134aa)
30S ribosomal protein S9 n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000363BEDB
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=CG_Woesearch_02
30S ribosomal protein S9
rifcsplowo2_01_scaffold_45928_9

Not on your lists


3871..4068
DNA (198bp) protein (66aa)
DNA-directed RNA polymerase subunit N n=1 Tax=uncultured organism HF70_19B12 RepID=Q2Q0G7_9ZZZZ id=5103677 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Marine sediment metagenome DNA, contig: S01H1_S00836 {ECO:0000313|EMBL:GAF92383.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
DNA-directed RNA polymerase subunit N
rifcsplowo2_01_scaffold_45928_10
R_RIF_OD1_03_48_11, RIF-OD1-3, Parcubacteria, Bacteria

Not on your lists

4195..4710
DNA (516bp) protein (172aa)
leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_03_48_11_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DJX5_9BACT
rifcsplowo2_01_scaffold_45928_11

Not on your lists

5068..5379
DNA (312bp) protein (104aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1579378 species="Archaea.;" sourc
Leucine--tRNA ligase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=SYL_ALKMQ id=5102912 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Leucine-tRNA ligase
Displaying 11 items

View Taxonomy