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rifcsplowo2_01_scaffold_25147

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_25147_1
Methanobrevibacter sp. AbM4, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(23..571)
DNA (549bp) protein (183aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=224719 species="Ar
2'-5' RNA ligase LigT n=1 Tax=Methanobrevibacter sp. AbM4 RepID=R9SIK3_9EURY
ligT; 2'-5' RNA ligase LigT
rifcsplowo2_01_scaffold_25147_2

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comp(584..904)
DNA (321bp) protein (107aa)
Putative RNA-binding protein, contains TRAM domain id=5800293 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61624.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
hypothetical protein
rifcsplowo2_01_scaffold_25147_3
bacterium UASB270, Bacteria

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1114..2259
DNA (1146bp) protein (382aa)
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13)
2'-deoxycytidine 5'-triphosphate deaminase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PJ22_9BACT
2'-deoxycytidine 5'-triphosphate deaminase {ECO:0000313|EMBL:GAK58004.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
rifcsplowo2_01_scaffold_25147_4

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2302..3357
DNA (1056bp) protein (352aa)
3-beta hydroxysteroid dehydrogenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B3CA67
Marine sediment metagenome DNA, contig: S01H1_S28925 {ECO:0000313|EMBL:GAG41401.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsplowo2_01_scaffold_25147_5

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comp(3411..4448)
DNA (1038bp) protein (346aa)
DNA repair and recombination protein RadA {ECO:0000256|HAMAP-Rule:MF_00348}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
DNA repair and recombination protein RadA; K04483 DNA repair protein RadA id=5046762 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA repair and recombination RadA-like protein
rifcsplowo2_01_scaffold_25147_6
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(4450..4740)
DNA (291bp) protein (97aa)
id=5046763 Tax=RBG_13_Woesearchaeota_36_6_curated
id=5046763 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_25147_7
unknown

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comp(4932..5447)
DNA (516bp) protein (172aa)

This feature has no annotations

rifcsplowo2_01_scaffold_25147_8

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comp(5454..6440)
DNA (987bp) protein (329aa)
OB-fold tRNA/helicase-type nucleic acid binding protein; K07466 replication factor A1 id=5046768 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Replication factor A1 {ECO:0000313|EMBL:KHO45956.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Nucleic acid binding OB-fold tRNA/helicase-type
rifcsplowo2_01_scaffold_25147_9
unknown

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comp(6523..7272)
DNA (750bp) protein (250aa)

This feature has no annotations

rifcsplowo2_01_scaffold_25147_10
unknown

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comp(7269..7745)
DNA (477bp) protein (159aa)

This feature has no annotations

rifcsplowo2_01_scaffold_25147_11
unknown

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comp(7800..8291)
DNA (492bp) protein (164aa)

This feature has no annotations

rifcsplowo2_01_scaffold_25147_12
unknown

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comp(8294..8968)
DNA (675bp) protein (225aa)

This feature has no annotations

rifcsplowo2_01_scaffold_25147_13
unknown

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comp(8920..9354)
DNA (435bp) protein (145aa)

This feature has no annotations

rifcsplowo2_01_scaffold_25147_14
unknown

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comp(9359..10042)
DNA (684bp) protein (228aa)

This feature has no annotations

Displaying 14 items

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