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rifcsplowo2_01_scaffold_2832

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_2832_1

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151..1260
DNA (1110bp) protein (370aa)
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:CBH39239.1}; EC=1.1.1.85 {ECO:0000313|EMBL:CBH39239.1};; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=uncultured archaeon RepID=D1JAV9_9ARCH
rifcsplowo2_01_scaffold_2832_2
AR11, Woesearchaeaota, DPANN, Archaea

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1253..1723
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=AR11
NMD3-related protein (nonsense mediated mRNA decay); K07562 nonsense-mediated mRNA decay protein 3 id=5043728 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
NMD3 family protein
rifcsplowo2_01_scaffold_2832_3
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(1715..2881)
DNA (1167bp) protein (389aa)
hypothetical protein; K09150 hypothetical protein Tax=CG_Woesearch_01
hypothetical protein; K09150 hypothetical protein id=5043729 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsplowo2_01_scaffold_2832_4
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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2957..3337
DNA (381bp) protein (127aa)
MarR family transcriptional regulator (EC:2.7.1.161)
Riboflavin kinase {ECO:0000256|HAMAP-Rule:MF_01285}; Short=RFK {ECO:0000256|HAMAP-Rule:MF_01285};; EC=2.7.1.161 {ECO:0000256|HAMAP-Rule:MF_01285};; CTP-dependent riboflavin kinase {ECO:0000256|HAMAP-R
Riboflavin kinase n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RDY3_ARCPA
rifcsplowo2_01_scaffold_2832_5

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3334..3810
DNA (477bp) protein (159aa)
Riboflavin synthase {ECO:0000313|EMBL:KHO51030.1}; EC=2.5.1.9 {ECO:0000313|EMBL:KHO51030.1};; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
riboflavin synthase (EC:2.5.1.9)
Riboflavin synthase n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B7F7_METTP
rifcsplowo2_01_scaffold_2832_6
AR10, Diapherotrites, DPANN, Archaea

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3795..4202
DNA (408bp) protein (136aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9 2.5.1.78)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] id=5241328 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=AR10
rifcsplowo2_01_scaffold_2832_7
unknown

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comp(4208..4381)
DNA (174bp) protein (58aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2832_8
AR11, Woesearchaeaota, DPANN, Archaea

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comp(4419..4997)
DNA (579bp) protein (193aa)
id=5042250 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=AR11
rifcsplowo2_01_scaffold_2832_9
unknown

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5114..5887
DNA (774bp) protein (258aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2832_10
Parcubacteria bacterium GW2011_GWF1_40_5, Parcubacteria, Bacteria

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comp(5874..6293)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Fusobacterium sp. CAG:815 RepID=R7LWK5_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:KKR65098.1}; TaxID=1618955 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF1_40_5.;"
hypothetical protein
rifcsplowo2_01_scaffold_2832_11
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(6290..7003)
DNA (714bp) protein (238aa)
hypothetical protein Tax=RBG_13_Woesearchaeota_36_6_curated
Putative membrane-associated protein/domain protein id=5799953 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
putative membrane-associated protein/domain protein
rifcsplowo2_01_scaffold_2832_12
AR15, Woesearchaeaota, DPANN, Archaea

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7259..8710
DNA (1452bp) protein (484aa)
Putative uncharacterized protein id=5799954 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Putative uncharacterized protein Tax=AR15
hypothetical protein
rifcsplowo2_01_scaffold_2832_13
R_RIF_OD1_13_47_10, RIF-OD1-13, Parcubacteria, Bacteria

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8720..9370
DNA (651bp) protein (217aa)
coiled-coil 186..207 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_13_47_10_curated
coiled-coil 186..207 id=30995 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
rifcsplowo2_01_scaffold_2832_14
unknown

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9435..9695
DNA (261bp) protein (87aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2832_15

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9731..10828
DNA (1098bp) protein (366aa)
RNA 3'-terminal phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200}; Short=RNA cyclase {ECO:0000256|HAMAP-Rule:MF_00200};; Short=RNA-3'-phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200};; EC=6.5.1.4
RNA 3'-terminal-phosphate cyclase (EC:6.5.1.4)
RNA 3'-terminal phosphate cyclase id=5800817 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_2832_16

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10979..11341
DNA (363bp) protein (121aa)
Elongation factor 1-beta n=2 Tax=Methanobacterium RepID=K2RST2_METFO id=5103134 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Elongation factor 1-beta
Elongation factor 1-beta {ECO:0000256|HAMAP-Rule:MF_00043, ECO:0000256|SAAS:SAAS00044427}; Short=EF-1-beta {ECO:0000256|HAMAP-Rule:MF_00043};; aEF-1beta {ECO:0000256|HAMAP-Rule:MF_00043}; TaxID=157937
rifcsplowo2_01_scaffold_2832_17
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(11344..12423)
DNA (1080bp) protein (360aa)
trm1; N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC:2.1.1.32); K00555 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] Tax=CG_Woesearch_02
tRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase id=5800001 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
N(2),N(2)-dimethylguanosine tRNA methyltransferase
rifcsplowo2_01_scaffold_2832_18
AR11, Woesearchaeaota, DPANN, Archaea

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12434..14260
DNA (1827bp) protein (609aa)
InfB_2; translation initiation factor IF-2; K03243 translation initiation factor 5B Tax=AR11
InfB_2; translation initiation factor IF-2; K03243 translation initiation factor 5B id=5043737 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
putative translation initiation factor IF-2
rifcsplowo2_01_scaffold_2832_19
CG_Woesearch_02, Woesearchaeota, Archaea

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14300..14752
DNA (453bp) protein (151aa)
hypothetical protein Tax=CG_Woesearch_02
Putative uncharacterized protein id=5800004 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsplowo2_01_scaffold_2832_20
unknown

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comp(14765..15088)
DNA (324bp) protein (108aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2832_21
unknown

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comp(15133..16491)
DNA (1359bp) protein (453aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2832_22
unknown

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comp(16599..18221)
DNA (1623bp) protein (541aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2832_23
unknown

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comp(18226..18351)
DNA (126bp) protein (42aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2832_24
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(18434..18859)
DNA (426bp) protein (142aa)
hypothetical protein; K09738 hypothetical protein Tax=RBG_13_Woesearchaeota_36_6_curated
Putative uncharacterized protein id=5800008 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsplowo2_01_scaffold_2832_25
CG_Pacearch_01, Pacearchaeota, Archaea

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19030..19458
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000380E9B4
transposase Tax=CG_Pacearch_01
transposase IS200-family protein
rifcsplowo2_01_scaffold_2832_26

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comp(19518..19835)
DNA (318bp) protein (106aa)
seg id=5043584 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46560.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsplowo2_01_scaffold_2832_27

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19942..20319
DNA (378bp) protein (126aa)
hypothetical protein id=5043583 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46559.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsplowo2_01_scaffold_2832_28
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(20332..21243)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003753E03
ATP binding protein Tax=CG_Woesearch_02
asparagine synthase
rifcsplowo2_01_scaffold_2832_29
CG_Woesearch_02, Woesearchaeota, Archaea

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21331..21546
DNA (216bp) protein (72aa)
hypothetical protein
id=5800009 Tax=CG_Woesearch_02
id=5800009 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_2832_30
Pristionchus pacificus, Pristionchus, Diplogasterida, Chromadorea, Nematoda, Metazoa

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comp(21547..22593)
DNA (1047bp) protein (349aa)
Uncharacterized protein (Fragment) n=1 Tax=Pristionchus pacificus RepID=H3FMW8_PRIPA
Uncharacterized protein {ECO:0000313|EnsemblMetazoa:PPA23626}; TaxID=54126 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Diplogasterida; Neodiplogasteridae; Pristionchus.;" source="Pr
hypothetical protein
Displaying items 1-30 of 42 in total

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