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rifcsplowo2_01_scaffold_5556

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_5556_1
unknown

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1..225
DNA (225bp) protein (75aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5556_2

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573..1760
DNA (1188bp) protein (396aa)
putative ATPase (AAA+ superfamily); K07133 id=5043707 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47023.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
rifcsplowo2_01_scaffold_5556_3
Methanosarcina vacuolata, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1757..3748)
DNA (1992bp) protein (664aa)
NHL repeat containing protein n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GI56_METPE
cell surface protein
Cell surface protein {ECO:0000313|EMBL:AKB43006.1}; TaxID=1434123 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina vacu
rifcsplowo2_01_scaffold_5556_4

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comp(3773..4363)
DNA (591bp) protein (197aa)
RNA methylase; K07579 putative methylase id=5044974 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54574.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
DNA methylase
rifcsplowo2_01_scaffold_5556_5

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comp(4356..4775)
DNA (420bp) protein (140aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO52506.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
id=5049518 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsplowo2_01_scaffold_5556_6

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comp(4777..5316)
DNA (540bp) protein (180aa)
hypothetical protein id=5050692 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO53361.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
hypothetical protein
rifcsplowo2_01_scaffold_5556_7
AR18, Woesearchaeaota, DPANN, Archaea

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comp(5385..5801)
DNA (417bp) protein (139aa)
XRE family transcriptional regulator; K03627 putative transcription factor id=5044973 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
XRE family transcriptional regulator; K03627 putative transcription factor Tax=AR18
transcription factor
rifcsplowo2_01_scaffold_5556_8
unknown

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comp(6108..6290)
DNA (183bp) protein (61aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5556_9
unknown

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comp(6363..7721)
DNA (1359bp) protein (453aa)
Putative uncharacterized protein n=5 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AAF4_9EURY id=5103320 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative uncharacterized protein n=5 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AAF4_9EURY Tax=AR20
hypothetical protein
rifcsplowo2_01_scaffold_5556_10
unknown

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comp(7705..8361)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QGH1_9EURY id=5103319 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QGH1_9EURY Tax=AR20
hypothetical protein
rifcsplowo2_01_scaffold_5556_11

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comp(8358..9599)
DNA (1242bp) protein (414aa)
Glycosyltransferase involved in cell wall biogenesis n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QGH0_9EURY id=5103318 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Glycosyltransferase involved in cell wall biogenesis
Glycosyltransferase involved in cell wall biogenesis {ECO:0000313|EMBL:AJF62599.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_5556_12
AR18, Woesearchaeaota, DPANN, Archaea

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comp(9592..11013)
DNA (1422bp) protein (474aa)
hypothetical protein
id=5044967 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=AR18
rifcsplowo2_01_scaffold_5556_13

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comp(10997..12445)
DNA (1449bp) protein (483aa)
hypothetical protein
id=5044966 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54566.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
rifcsplowo2_01_scaffold_5556_14

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comp(12429..13034)
DNA (606bp) protein (202aa)
segregation and condensation protein B; K06024 segregation and condensation protein B id=5044965 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Segregation and condensation protein B {ECO:0000313|EMBL:KHO54565.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
Segregation and condensation protein B
rifcsplowo2_01_scaffold_5556_15
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(13184..13741)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Thermococcus sp. (strain CGMCC 1.5172 / 4557) RepID=G0HKT3_THES4
nucleotidyltransferase Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsplowo2_01_scaffold_5556_16
CG_Pacearch_05, Pacearchaeota, Archaea

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comp(13695..14069)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=G8ZKM1_PYRAB
hypothetical protein Tax=CG_Pacearch_05
hypothetical protein
rifcsplowo2_01_scaffold_5556_17
unknown

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comp(14182..15813)
DNA (1632bp) protein (544aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5556_18

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comp(15898..16995)
DNA (1098bp) protein (366aa)
peptide chain release factor 1; K03265 peptide chain release factor subunit 1 id=5044964 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Peptide chain release factor subunit 1 {ECO:0000313|EMBL:KHO54564.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
peptide chain release factor 1
rifcsplowo2_01_scaffold_5556_19
AR6, Pacearchaeaota, DPANN, Archaea

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comp(17019..17714)
DNA (696bp) protein (232aa)
Tax=AR6
rifcsplowo2_01_scaffold_5556_20
unknown

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17793..18080
DNA (288bp) protein (96aa)

This feature has no annotations

rifcsplowo2_01_scaffold_5556_21

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comp(18077..18955)
DNA (879bp) protein (293aa)
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=5044349 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Valyl-tRNA synthetase {ECO:0000313|EMBL:KHO48284.1}; EC=6.1.1.9 {ECO:0000313|EMBL:KHO48284.1};; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
valS; valine--tRNA ligase (EC:6.1.1.9)
Displaying 21 items

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