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rifcsphigho2_02_scaffold_6837

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_6837_1
unknown

Not on your lists

1..66
DNA (66bp) protein (22aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6837_2
unknown

Not on your lists

287..442
DNA (156bp) protein (52aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6837_3
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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506..1180
DNA (675bp) protein (225aa)
hypothetical protein; K03151 thiamine biosynthesis protein ThiI Tax=RBG_16_Euryarchaeota_68_13_curated
thiamine biosynthesis protein ThiI
thiamine biosynthesis/tRNA modification protein ThiI; K03151 thiamine biosynthesis protein ThiI id=5241324 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_6837_4
unknown

Not on your lists

1340..2518
DNA (1179bp) protein (393aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6837_5
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(2515..3882)
DNA (1368bp) protein (456aa)
hypothetical protein id=8267522 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Marinimicrobia tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
MATE efflux family protein Tax=RBG_16_Aminicenantes_63_16_curated
MATE efflux family protein
rifcsphigho2_02_scaffold_6837_trna_4
unknown

Not on your lists

comp(4185..4301)
DNA (117bp)
transferRNA
rifcsphigho2_02_scaffold_6837_6
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(4415..4930)
DNA (516bp) protein (172aa)
ThiJ/PfpI domain-containing protein; K05520 protease I [EC:3.2.-.-] Tax=CG_Woesearch_01
Intracellular protease, PfpI family n=1 Tax=Methanotorris formicicus Mc-S-70 RepID=H1KW96_9EURY
ThiJ/PfpI domain protein
rifcsphigho2_02_scaffold_6837_7
RIFOXYB1_FULL_OD1_Magasanikbacteria_40_15_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5027..5776)
DNA (750bp) protein (250aa)
nqrF; NADH:ubiquinone oxidoreductase, na translocating, f subunit; K00351 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-] Tax=RIFOXYB1_FULL_OD1_Magasanikbacteria_40_15_curated
Na(+)-translocating NADH-quinone reductase subunit F (EC:1.6.5.-)
Na(+)-translocating NADH-quinone reductase subunit F n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XVZ7_PARAH
rifcsphigho2_02_scaffold_6837_8

Not on your lists

comp(5852..7324)
DNA (1473bp) protein (491aa)
RNA terminal phosphate cyclase; K14415 tRNA-splicing ligase RtcB [EC:6.5.1.3] id=24409443 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Uncharacterized protein {ECO:0000313|EMBL:KKN53900.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
tRNA-splicing ligase RtcB
rifcsphigho2_02_scaffold_6837_9

Not on your lists

7559..7753
DNA (195bp) protein (65aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO49660.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
transmembrane_regions id=5044093 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_02_scaffold_6837_10
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(7793..9496)
DNA (1704bp) protein (568aa)
hypothetical protein Tax=RBG_16_NC10_65_8_curated
hypothetical protein id=86521 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
hypothetical protein
rifcsphigho2_02_scaffold_6837_11
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(9575..10081)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI000374DB56
hypothetical protein Tax=RBG_16_Aminicenantes_63_16_curated
archease
rifcsphigho2_02_scaffold_6837_12
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10142..11005)
DNA (864bp) protein (288aa)
Prophage antirepressor n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6Z0_GEOUR
prophage antirepressor
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
rifcsphigho2_02_scaffold_6837_13
Histoplasma capsulatum, Histoplasma, Onygenales, Eurotiomycetidae, Ascomycota, Fungi

Not on your lists

11210..15490
DNA (4281bp) protein (1427aa)
Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus (strain NAm1 / WU24) RepID=A6QSQ4_AJECN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EDN02546.1}; TaxID=339724 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ajellomycetac
rifcsphigho2_02_scaffold_6837_14
RIFOXYB2_FULL_WOR_1_48_7_curated, WOR-1, Bacteria

Not on your lists

comp(15713..16678)
DNA (966bp) protein (322aa)
phosphate uptake regulator Tax=RIFOXYB2_FULL_WOR_1_48_7_curated
phosphate uptake regulator id=5045865 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_6837_15
GWA2_CPR1_42_17, CPR1, Bacteria

Not on your lists

16853..17959
DNA (1107bp) protein (369aa)
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase id=4092456 bin=GWA2_CPR4_42_17 species=unknown genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
Deoxyribose-phosphate aldolase {ECO:0000313|EMBL:KKS42538.1}; TaxID=1618341 species="Bacteria; candidate division CPR1.;" source="candidate division CPR1 bacterium GW2011_GWA2_42_17.;"
rifcsphigho2_02_scaffold_6837_16
Bacillus subtilis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18108..19502
DNA (1395bp) protein (465aa)
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|H
Phosphopentomutase n=1 Tax=Bacillus atrophaeus UCMB-5137 RepID=R0PDP3_BACAT
rifcsphigho2_02_scaffold_6837_17
unknown

Not on your lists

comp(19534..20550)
DNA (1017bp) protein (339aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1YZU4_9EURY id=5103798 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Filamentation induced by cAMP protein Fic n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1YZU4_9EURY Tax=AR20
Filamentation induced by cAMP protein Fic
rifcsphigho2_02_scaffold_6837_18

Not on your lists

comp(20820..21425)
DNA (606bp) protein (202aa)
Putative uncharacterized protein C1_0077 n=1 Tax=uncultured archaeon RepID=Q2Y4Z9_9ARCH
Putative uncharacterized protein C1_0077 {ECO:0000313|EMBL:CAI64108.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
cyclase family protein
rifcsphigho2_02_scaffold_6837_19
R_OP11_Roizmanbacteria_39_9, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists


comp(21595..21930)
DNA (336bp) protein (112aa)
Methionine-tRNA ligase, beta subunit n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=V9HHD3_9FUSO
methionyl-tRNA synthetase; K06878 tRNA-binding protein Tax=RIFCSPHIGHO2_02_FULL_OP11_Roizmanbacteria_39_9_curated
methionyl-tRNA synthetase
rifcsphigho2_02_scaffold_6837_20
R_OD1_Falkowbacteria_39_13, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22029..23471)
DNA (1443bp) protein (481aa)
ppsA; phosphoenolpyruvate synthase (EC:2.7.9.2); K01007 pyruvate, water dikinase [EC:2.7.9.2] Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_39_13_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI0003761AD5
phosphoenolpyruvate synthase
rifcsphigho2_02_scaffold_6837_21

Not on your lists

comp(23662..24498)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZL82_THELI
Uncharacterized protein {ECO:0000313|EMBL:CEG12605.1}; TaxID=717931 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="groundwater metagenome.;"
hypothetical protein
rifcsphigho2_02_scaffold_6837_22
RBG_19FT_COMBO_WWE3_34_6_curated, WWE3, Bacteria

Not on your lists

comp(24547..24885)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DSA3_9BACT
redox disulfide domain-containing protein Tax=RBG_19FT_COMBO_WWE3_34_6_curated
hypothetical protein
rifcsphigho2_02_scaffold_6837_23
Thermococcus litoralis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(24938..25132)
DNA (195bp) protein (65aa)
Ferredoxin n=2 Tax=Thermococcus litoralis RepID=FER_THELI
ferredoxin
Ferredoxin; TaxID=2265 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus litoralis.;"
rifcsphigho2_02_scaffold_6837_trna_3
unknown

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comp(25233..25356)
DNA (124bp)
transferRNA
rifcsphigho2_02_scaffold_6837_24
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(25480..26988)
DNA (1509bp) protein (503aa)
transmembrane_regions Tax=CG_Woesearch_02
seg id=5800566 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_6837_25
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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27285..27884
DNA (600bp) protein (200aa)
50S ribosomal protein L15e {ECO:0000313|EMBL:KKU99679.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
50S ribosomal protein L15e id=5799715 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L15e
rifcsphigho2_02_scaffold_6837_26
AR6, Pacearchaeaota, DPANN, Archaea

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27940..28338
DNA (399bp) protein (133aa)
Tax=AR6
rifcsphigho2_02_scaffold_6837_27
unknown

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comp(28418..28675)
DNA (258bp) protein (86aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6837_trna_1
unknown

Not on your lists

28841..28915
DNA (75bp)
transferRNA
Displaying items 1-30 of 47 in total

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