ggKbase home page

rifcsphigho2_02_scaffold_9505

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_9505_1
Parcubacteria bacterium GW2011_GWA2_46_9, Parcubacteria, Bacteria

Not on your lists

comp(67..1056)
DNA (990bp) protein (330aa)
Putative tRNA pseudouridine synthase B {ECO:0000313|EMBL:KKU47144.1}; Flags: Fragment;; TaxID=1618838 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_46_9.;"
Probable tRNA pseudouridine synthase B id=5799607 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
putative tRNA pseudouridine synthase B
rifcsphigho2_02_scaffold_9505_2
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(1399..1986)
DNA (588bp) protein (196aa)
RPL31A; 50S ribosomal protein L31; K02910 large subunit ribosomal protein L31e Tax=CG_Woesearch_01
RPL31A; 50S ribosomal protein L31; K02910 large subunit ribosomal protein L31e id=5049181 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribosomal protein L31e
rifcsphigho2_02_scaffold_9505_3
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(2128..2301)
DNA (174bp) protein (58aa)
hypothetical protein
id=5103297 Tax=CG_Woesearch_03
id=5800694 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_9505_4
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2304..2633)
DNA (330bp) protein (110aa)
DNA-binding TFAR19-like protein; K06875 programmed cell death protein 5 Tax=AR11
DNA-binding protein; K06875 programmed cell death protein 5 id=5049180 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_9505_5

Not on your lists


comp(2638..3303)
DNA (666bp) protein (222aa)
30S ribosomal protein S19e id=5800695 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S19e {ECO:0000256|HAMAP-Rule:MF_01474}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
30S ribosomal protein S19
rifcsphigho2_02_scaffold_9505_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

3474..3917
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GV66_9EURY
hypothetical protein Tax=RBG_16_Euryarchaeota_41_19_curated
hypothetical protein
rifcsphigho2_02_scaffold_9505_7
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(3907..4686)
DNA (780bp) protein (260aa)
Dam-replacing family. (EC:3.1.21.4)
Dam-replacing family n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KUK6_9FIRM
Tax=BJP_IG2158_Thermoplasmatales_53_16
rifcsphigho2_02_scaffold_9505_8
unknown

Not on your lists

4742..5029
DNA (288bp) protein (96aa)

This feature has no annotations

rifcsphigho2_02_scaffold_9505_9

Not on your lists

comp(5026..5625)
DNA (600bp) protein (200aa)
Modification methylase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.113 {ECO:0000256|RuleBase:RU362026};; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
Site-specific DNA-methyltransferase (Adenine-specific) n=2 Tax=Mobiluncus curtisii RepID=D6ZH52_MOBCV id=5103177 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Site-specific DNA-methyltransferase Adenine-specific
rifcsphigho2_02_scaffold_9505_10
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(5627..5788)
DNA (162bp) protein (54aa)
Uncharacterized protein {ECO:0000313|EMBL:AIC15251.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera v
rifcsphigho2_02_scaffold_9505_11
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5893..7014)
DNA (1122bp) protein (374aa)
aminopeptidase (EC:3.4.11.-)
leucyl aminopeptidase id=15193434 bin=GWC2_NOV_55_46 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_NOV_55_46 organism_group=Proteobacteria
leucyl aminopeptidase Tax=GWC2_Deltaproteobacteria_55_46b_curated
rifcsphigho2_02_scaffold_9505_12
unknown

Not on your lists

comp(7046..7726)
DNA (681bp) protein (227aa)

This feature has no annotations

rifcsphigho2_02_scaffold_9505_13

Not on your lists

7995..10781
DNA (2787bp) protein (929aa)
ATP dependent helicase, lhr family; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] id=5049176 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ATP-dependent helicase Lhr and Lhr-like protein helicase {ECO:0000313|EMBL:KHO45167.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO45167.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
DEAD/H associated protein
rifcsphigho2_02_scaffold_9505_14
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

10851..11705
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037A9529
filamentation induced by cAMP protein Fic Tax=CG_Woesearch_01
hypothetical protein
rifcsphigho2_02_scaffold_9505_15
GWA2_OP3X_41_15_curated, OP3X, Bacteria

Not on your lists

11702..12298
DNA (597bp) protein (199aa)
coaE; dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=GWA2_OP3X_41_15_curated
Dephospho-CoA kinase n=1 Tax=Desulfotomaculum kuznetsovii DSM 6115 RepID=F6CMC3_DESK7 id=1241089 bin=RBG2 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG2 organism_group=Chloroflexi
coaE; dephospho-CoA kinase
rifcsphigho2_02_scaffold_9505_16
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12295..13245)
DNA (951bp) protein (317aa)
Methyltransferase type 11 n=2 Tax=Methanococcus maripaludis RepID=A4FVU5_METM5
UbiE/COQ5 family methyltransferase Tax=AR11
type 11 methyltransferase
rifcsphigho2_02_scaffold_9505_17
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

13355..13831
DNA (477bp) protein (159aa)
Phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
Phosphopantetheine adenylyltransferase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S326_THEOJ
rifcsphigho2_02_scaffold_9505_18

Not on your lists

comp(13828..14040)
DNA (213bp) protein (71aa)
ribosomal protein S17e Rps17e; K02962 small subunit ribosomal protein S17e id=5043656 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S17e {ECO:0000256|HAMAP-Rule:MF_00511, ECO:0000256|SAAS:SAAS00278999}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
rps17E; 30S ribosomal protein S17
rifcsphigho2_02_scaffold_9505_19
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(14042..14248)
DNA (207bp) protein (69aa)
DNA-directed RNA polymerase subunit K; K03055 DNA-directed RNA polymerase subunit K [EC:2.7.7.6] Tax=CG_Woesearch_02
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000360FC43
hypothetical protein
rifcsphigho2_02_scaffold_9505_20
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(14290..15000)
DNA (711bp) protein (237aa)
threonyl/alanyl tRNA synthetase SAD; K07050 Tax=CG_Micra_05
Alanyl-tRNA editing protein AlaX-M id=5800210 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Alanyl-tRNA editing protein AlaX-M
rifcsphigho2_02_scaffold_9505_21
nanoarchaeote Nst1, Nanoarchaeota, Archaea

Not on your lists

comp(15217..15852)
DNA (636bp) protein (212aa)
Putative transcriptional regulator, contains HTH and 4VR domain n=1 Tax=nanoarchaeote Nst1 RepID=R1FUG7_9ARCH
Putative transcriptional regulator, contains HTH and 4VR domain {ECO:0000313|EMBL:EOD42755.1}; TaxID=1294122 species="Archaea; Nanoarchaeota.;" source="nanoarchaeote Nst1.;"
rifcsphigho2_02_scaffold_9505_22
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

15988..16353
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000378BB01
Putative uncharacterized protein Tax=AR11
rifcsphigho2_02_scaffold_9505_23

Not on your lists

16435..17322
DNA (888bp) protein (296aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51144.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein
phosphoesterase; K06953 id=5240761 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_9505_24
unknown

Not on your lists

17315..18304
DNA (990bp) protein (330aa)

This feature has no annotations

rifcsphigho2_02_scaffold_9505_25

Not on your lists

comp(18264..18809)
DNA (546bp) protein (182aa)
Marine sediment metagenome DNA, contig: S01H1_S34811 {ECO:0000313|EMBL:GAG34603.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
hypothetical protein id=5049192 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
putative transcription regulator, containing CBS protein
rifcsphigho2_02_scaffold_9505_26
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

18921..20087
DNA (1167bp) protein (389aa)
metK; methionine adenosyltransferase (EC:2.5.1.6) Tax=CG_Woesearch_01
S-adenosylmethionine synthetase; K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] id=5049197 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
methionine adenosyltransferase (EC:2.5.1.6)
rifcsphigho2_02_scaffold_9505_27
unknown

Not on your lists

comp(20108..20587)
DNA (480bp) protein (160aa)

This feature has no annotations

rifcsphigho2_02_scaffold_9505_28
unknown

Not on your lists

20711..20791
DNA (81bp) protein (27aa)

This feature has no annotations

Displaying 28 items

View Taxonomy