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rifcsphigho2_02_scaffold_19472

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_19472_1
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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187..2151
DNA (1965bp) protein (655aa)
Glycoside hydrolase 15-related protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XLZ0_METZD rbh
glycoside hydrolase
Glycoside hydrolase 15-related protein {ECO:0000313|EMBL:AEH60918.1}; TaxID=679901 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosalsum.;" source="Met
rifcsphigho2_02_scaffold_19472_2
Thaumarchaeota archaeon SCGC AB-539-E09, Thaumarchaeota, Archaea

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2148..2699
DNA (552bp) protein (184aa)
yrrM; O-methyltransferase YrrM (EC:2.1.1.-)
Putative O-methyltransferase n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U285_9ARCH
Putative O-methyltransferase {ECO:0000313|EMBL:EMR73045.1}; TaxID=1198115 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon SCGC AB-539-E09.;"
rifcsphigho2_02_scaffold_19472_3
AR11, Woesearchaeaota, DPANN, Archaea

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2701..3477
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=candidate division OD1 bacterium SCGC AAA011-J16 RepID=UPI000378B6FD
hypothetical protein Tax=AR11
hypothetical protein
rifcsphigho2_02_scaffold_19472_4
RLO_RIF03_38_15, RIF3, Bacteria

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3524..4102
DNA (579bp) protein (193aa)
N-glycosylase/DNA lyase (EC:4.2.99.18); K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
DNA-(Apurinic or apyrimidinic site) lyase id=4202679 bin=GWC2_Nitrospirae-rel_56_14 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
N-glycosylase/DNA lyase
rifcsphigho2_02_scaffold_19472_5
unknown

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4113..4409
DNA (297bp) protein (99aa)

This feature has no annotations

rifcsphigho2_02_scaffold_19472_6
bacterium UASB270, Bacteria

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4457..5050
DNA (594bp) protein (198aa)
Uncharacterized protein {ECO:0000313|EMBL:GAK59465.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
hypothetical protein; K08984 putative membrane protein id=5803238 bin=OD1_GWC2_34_28 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
rifcsphigho2_02_scaffold_19472_7
AR13, Pacearchaeaota, DPANN, Archaea

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5218..5718
DNA (501bp) protein (167aa)
Tax=AR13
rifcsphigho2_02_scaffold_19472_8
AR18, Woesearchaeaota, DPANN, Archaea

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5768..6436
DNA (669bp) protein (223aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] id=5044109 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] Tax=AR18
putative DNA glycosylase/AP lyase (EC:3.2.2.- 4.2.99.18)
rifcsphigho2_02_scaffold_19472_9
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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6507..8120
DNA (1614bp) protein (538aa)
hypothetical protein n=1 Tax=Fischerella sp. PCC 9339 RepID=UPI0002D9AE6A rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ28901.1}; TaxID=1173026 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 7428.;"
rifcsphigho2_02_scaffold_19472_10
GWC2_CPR2_39_10, CPR2, Bacteria

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8288..8743
DNA (456bp) protein (152aa)
peroxiredoxin Q/BCP (EC:1.11.1.15)
peroxiredoxin; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15] id=5240953 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Peroxiredoxin Tax=GWC2_CPR2_39_10
rifcsphigho2_02_scaffold_19472_11
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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8748..9257
DNA (510bp) protein (170aa)
Pfpi family intracellular protease; K05520 protease I [EC:3.2.-.-] Tax=RBG_13_Deltaproteobacteria_61_14_curated
Intracellular protease, PfpI family id=4759403 bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
intracellular protease, PfpI family
rifcsphigho2_02_scaffold_19472_12
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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9506..10216
DNA (711bp) protein (237aa)
xylene monooxygenase electron transfer component Tax=GWA2_WOR_2_47_8_curated
Oxidoreductase FAD-binding domain protein id=5799967 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
oxidoreductase FAD-binding domain-containing protein
rifcsphigho2_02_scaffold_19472_13
R_PER_ii_51_35, PER-ii, Bacteria

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10265..11062
DNA (798bp) protein (266aa)
ABC transporter, iron chelate uptake transporter (FeCT) family, periplasmic substrate-binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPHIGHO2_01_FULL_PER_ii_51
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein id=5048739 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ABC transporter substrate-binding protein
rifcsphigho2_02_scaffold_19472_14
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

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11311..12342
DNA (1032bp) protein (344aa)
Glycosyl transferase, family 2 n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J4B5_DESRM
bifunctional SAM-dependent methyltransferase, type 11,/glycosyltransferase, family 2, hypothetical protein Tax=RBG_13_Nitrospirae_43_8_curated
glycosyl transferase family protein
rifcsphigho2_02_scaffold_19472_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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12305..13057
DNA (753bp) protein (251aa)
short chain dehydrogenase id=14626370 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
short chain dehydrogenase Tax=CSP1_6_Rokubacteria
short-chain dehydrogenase/reductase SDR
rifcsphigho2_02_scaffold_19472_16
AR15, Woesearchaeaota, DPANN, Archaea

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comp(13026..13796)
DNA (771bp) protein (257aa)
Uncharacterized protein id=5799956 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein Tax=AR15
hypothetical protein
rifcsphigho2_02_scaffold_19472_17
unknown

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comp(13829..14263)
DNA (435bp) protein (145aa)

This feature has no annotations

rifcsphigho2_02_scaffold_19472_18
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(14313..14507)
DNA (195bp) protein (65aa)
Stress-responsive transcriptional regulator n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46F85_METBF
Stress-responsive transcriptional regulator {ECO:0000313|EMBL:AKB24008.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" sour
stress-responsive transcriptional regulator
rifcsphigho2_02_scaffold_19472_19
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(14509..15603)
DNA (1095bp) protein (365aa)
TPR repeat-containing protein MJ1345 Tax=AR11
Putative uncharacterized protein id=4167545 bin=GWF2_Lentisphaerae_38_69 species=Campylobacter hominis genus=Campylobacter taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
rifcsphigho2_02_scaffold_19472_20
CG_Woesearch_01, Woesearchaeota, Archaea

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15834..16391
DNA (558bp) protein (186aa)
Transposase IS200-family protein n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R902_AMMDK
transposase IS200-family protein; K07491 putative transposase Tax=CG_Woesearch_01
transposase IS200-family protein
Displaying 20 items

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