ggKbase home page

rifcsphigho2_02_scaffold_1528

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_1528_1
Palaeococcus pacificus, Palaeococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(125..1087)
DNA (963bp) protein (321aa)
UDP-N-acetylglucosamine-dolichyl-phosphate N-AceGluNH-phosphotransferase n=1 Tax=Pyrococcus sp. ST04 RepID=I3RDF0_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF70068.1}; TaxID=1343739 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcus.;" source="Palaeococcus pacificus DY203
rifcsphigho2_02_scaffold_1528_2
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(1084..2340)
DNA (1257bp) protein (419aa)
tRNA pseudouridine13 synthase (EC:5.4.99.27)
tRNA pseudouridine synthase D; K06176 tRNA pseudouridine13 synthase [EC:5.4.99.27] id=5241783 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
tRNA pseudouridine synthase D; K06176 tRNA pseudouridine13 synthase [EC:5.4.99.27] Tax=AR10
rifcsphigho2_02_scaffold_1528_3
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(2359..3600)
DNA (1242bp) protein (414aa)
peptide chain release factor subunit 1
peptide chain release factor 1; K03265 peptide chain release factor subunit 1 id=5241784 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
peptide chain release factor 1; K03265 peptide chain release factor subunit 1 Tax=AR10
rifcsphigho2_02_scaffold_1528_4
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(3654..3905)
DNA (252bp) protein (84aa)
peptide chain release factor subunit 1
peptide chain release factor 1; K03265 peptide chain release factor subunit 1 id=5241784 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
peptide chain release factor 1; K03265 peptide chain release factor subunit 1 Tax=AR10
rifcsphigho2_02_scaffold_1528_5

Not on your lists

comp(4064..4420)
DNA (357bp) protein (119aa)
Protein of unknown function DUF2283 id=5043585 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46561.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_02_scaffold_1528_6
unknown

Not on your lists

comp(4407..4739)
DNA (333bp) protein (111aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1528_7
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

4868..5815
DNA (948bp) protein (316aa)
uridylate kinase (EC:2.7.4.22)
uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] id=5241785 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=AR10
rifcsphigho2_02_scaffold_1528_8

Not on your lists


comp(5823..6812)
DNA (990bp) protein (330aa)
diphthamide synthase subunit DPH2
diphthine synthase, DPH2 subunit; K07561 diphthamide synthase subunit DPH2 id=5241787 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Diphthamide synthase subunit DPH2 {ECO:0000313|EMBL:AJF60778.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_1528_9
unknown

Not on your lists

6857..7753
DNA (897bp) protein (299aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1528_10
CG_Wolfe_01, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(7765..11586)
DNA (3822bp) protein (1274aa)
phosphoenolpyruvate synthase (EC:2.7.9.2 2.7.3.9) Tax=CG_Wolfe_01
Probable phosphoenolpyruvate synthase n=1 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=PPSA_METJA
phosphoenolpyruvate synthase
rifcsphigho2_02_scaffold_1528_11

Not on your lists


comp(11644..12390)
DNA (747bp) protein (249aa)
50S ribosomal protein L10, large subunit ribosomal protein L10e
rpl10e; 50S ribosomal protein L10; K02866 large subunit ribosomal protein L10e id=5241788 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L10, large subunit ribosomal protein L10e {ECO:0000313|EMBL:AJF60779.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_1528_12
unknown

Not on your lists

comp(12567..12917)
DNA (351bp) protein (117aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1528_13

Not on your lists

comp(12976..14160)
DNA (1185bp) protein (395aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55706.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
hypothetical protein
coiled-coil id=5241830 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_1528_14
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(14364..15767)
DNA (1404bp) protein (468aa)
hypothetical protein
Homing endonucleases id=5241833 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Homing endonucleases Tax=AR10
rifcsphigho2_02_scaffold_1528_15

Not on your lists

comp(15913..16131)
DNA (219bp) protein (73aa)
Small nuclear ribonucleoprotein {ECO:0000313|EMBL:KHO55708.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
small nuclear ribonucleoprotein
small nuclear ribonucleoprotein; K04796 small nuclear ribonucleoprotein id=5241827 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_1528_16

Not on your lists

comp(16228..17064)
DNA (837bp) protein (279aa)
septum site-determining protein MinD
ATPase; K03609 septum site-determining protein MinD id=5241826 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_1528_17
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(17134..17652)
DNA (519bp) protein (173aa)
hypothetical protein
id=5241825 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
rifcsphigho2_02_scaffold_1528_18

Not on your lists

comp(17665..18165)
DNA (501bp) protein (167aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO55711.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
id=5241824 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_1528_19

Not on your lists

comp(18175..18639)
DNA (465bp) protein (155aa)
hypothetical protein id=5241823 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF60814.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_1528_20

Not on your lists


18789..19205
DNA (417bp) protein (139aa)
translation initiation factor 5A
translation initiation factor eIF-5A; K03263 translation initiation factor 5A id=5241822 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Translation initiation factor 5A {ECO:0000256|HAMAP-Rule:MF_00085, ECO:0000256|SAAS:SAAS00016433}; Hypusine-containing protein {ECO:0000256|HAMAP-Rule:MF_00085}; eIF-5A {ECO:0000256|HAMAP-Rule:MF_0008
rifcsphigho2_02_scaffold_1528_21
unknown

Not on your lists

19230..19508
DNA (279bp) protein (93aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1528_22
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

19605..20273
DNA (669bp) protein (223aa)
Putative uncharacterized protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D2W0_METSW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG19089.1}; TaxID=868131 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacter
rifcsphigho2_02_scaffold_1528_trna_1
unknown

Not on your lists

20410..20494
DNA (85bp)
transferRNA
rifcsphigho2_02_scaffold_1528_23
unknown

Not on your lists

comp(20515..21297)
DNA (783bp) protein (261aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1528_24
unknown

Not on your lists

21437..21703
DNA (267bp) protein (89aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1528_25
unknown

Not on your lists

21940..22113
DNA (174bp) protein (58aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1528_26
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

22161..22586
DNA (426bp) protein (142aa)
Hit-like protein involved in cell-cycle regulation
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation id=5240730 bin=GW2011_AR10_complete species=Ignicoccus hospitalis genus=Ignicoccus taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=AR10
rifcsphigho2_02_scaffold_1528_27

Not on your lists


comp(22589..24067)
DNA (1479bp) protein (493aa)
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
metG; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] id=5241820 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Methionyl-tRNA synthetase {ECO:0000313|EMBL:AJF60811.1}; EC=6.1.1.10 {ECO:0000313|EMBL:AJF60811.1};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_1528_28
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

24366..26474
DNA (2109bp) protein (703aa)
replicative DNA helicase Mcm (EC:3.6.4.-)
MCM family protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] id=5241815 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
MCM family protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] Tax=AR10
rifcsphigho2_02_scaffold_1528_29
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

26516..27346
DNA (831bp) protein (277aa)
hypothetical protein
hypothetical protein id=5241810 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein Tax=AR10
Displaying items 1-30 of 49 in total

View Taxonomy