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rifcsphigho2_02_scaffold_20227

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_20227_1
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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328..1596
DNA (1269bp) protein (423aa)
Dead box RNA helicase n=2 Tax=Methanococcoides burtonii RepID=Q12UP5_METBU
DEAD/DEAH box helicase-like protein
Dead box RNA helicase {ECO:0000313|EMBL:ABE52831.1}; TaxID=259564 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides
rifcsphigho2_02_scaffold_20227_2
CG_Woesearch_02, Woesearchaeota, Archaea

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1741..3003
DNA (1263bp) protein (421aa)
DNA and RNA helicase Tax=CG_Woesearch_02
PHP domain protein id=5800577 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
PHP protein
rifcsphigho2_02_scaffold_20227_3
unknown

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3161..4063
DNA (903bp) protein (301aa)

This feature has no annotations

rifcsphigho2_02_scaffold_20227_4
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(4058..4468)
DNA (411bp) protein (137aa)
id=3876217 Tax=CG_Woesearch_01
id=3876217 bin=GWF2_Lentisphaerae_52_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
rifcsphigho2_02_scaffold_20227_5
R_OP11_Curtissbacteria_40_11, Curtissbacteria, Microgenomates, Bacteria

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comp(4468..5106)
DNA (639bp) protein (213aa)
Integral membrane protein n=1 Tax=uncultured bacterium RepID=K2A5X9_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_OP11_Curtissbacteria_40_11_curated
integral membrane protein
rifcsphigho2_02_scaffold_20227_6

Not on your lists

5145..6122
DNA (978bp) protein (326aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PEW9_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:EFK97905.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
rifcsphigho2_02_scaffold_20227_7
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

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comp(6115..7281)
DNA (1167bp) protein (389aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) RepID=D3PPE8_MEIRD
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
rifcsphigho2_02_scaffold_20227_8
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

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comp(7328..7756)
DNA (429bp) protein (143aa)
DoxX family protein id=4952782 bin=GWC2_Nitrospirae-rel_56_14 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
DoxX family protein; K15977 putative oxidoreductase Tax=GWC2_Nitrospirae_56_14_curated
DoxX family protein
rifcsphigho2_02_scaffold_20227_9

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comp(7809..8222)
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PEX6_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:EFK97912.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
hypothetical protein
rifcsphigho2_02_scaffold_20227_10

Not on your lists

comp(8219..8452)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PEX6_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:EFK97912.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
nuclease of the RecB family
rifcsphigho2_02_scaffold_20227_11
RHI_TM6_36_22, TM6, Bacteria

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comp(8437..9498)
DNA (1062bp) protein (354aa)
putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) Tax=RIFCSPHIGHO2_12_FULL_TM6_36_22_curated
poly-gamma-glutamate synthesis protein (capsule biosynthesis protein); K07282 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein) id=96824 bin=ACD64 species=ACD64 genus=ACD64 taxon_order=ACD64 taxon_class=ACD64 phylum=TM6 tax=ACD64 organism_group=TM6 organism_desc=unknown rbh
putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)
rifcsphigho2_02_scaffold_20227_12
CG_Elusi_05, Elusimicrobia, Bacteria

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comp(9803..9949)
DNA (147bp) protein (49aa)
Putative uncharacterized protein Tax=CG_Elusi_05
Uncharacterized protein id=5800244 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_20227_13
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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10103..10459
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VWU3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ENO12384.1}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-C06.;"
rifcsphigho2_02_scaffold_20227_14
R_RIF_OD1_02_44_20, RIF-OD1-2, Parcubacteria, Bacteria

Not on your lists

comp(10464..11030)
DNA (567bp) protein (189aa)
gph; phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_02_44_20_curated
haloacid dehalogenase domain-containing protein hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] id=5803173 bin=OD1_GWC2_34_28 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
HAD family hydrolase
rifcsphigho2_02_scaffold_20227_15
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(11098..11793)
DNA (696bp) protein (232aa)
TrmH family RNA methyltransferase, group 1 Tax=CG_Woesearch_01
RNA methyltransferase, TrmH family, group 1 id=5800379 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_20227_16
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(11910..13100)
DNA (1191bp) protein (397aa)
Predicted membrane-associated Zn-dependent protease id=5800378 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
peptidase M50 family Tax=CG_Woesearch_02
Peptidase M50
rifcsphigho2_02_scaffold_20227_17
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(13382..14215)
DNA (834bp) protein (278aa)
DNA mismatch repair protein MutS n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI000381AEAA
DNA mismatch repair protein MutS Tax=AR11
DNA mismatch repair protein MutS
Displaying 17 items

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