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rifcsphigho2_02_scaffold_2547

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_2547_1
unknown

Not on your lists

2..175
DNA (174bp) protein (58aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2547_2
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(233..613)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3IMR6_9PLAN
regulatory protein ArsR Tax=RBG_16_Deltaproteobacteria_49_23_curated
regulatory protein ArsR
rifcsphigho2_02_scaffold_2547_3
RBG_13_Euryarchaeota_31_8_curated, Euryarchaeota, Archaea

Not on your lists

comp(860..1132)
DNA (273bp) protein (91aa)
hypothetical protein Tax=RBG_13_Euryarchaeota_31_8_curated
rifcsphigho2_02_scaffold_2547_4
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

1237..1581
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036B1020
hypothetical protein Tax=RBG_13_Pacearchaeota_33_26_curated
hypothetical protein
rifcsphigho2_02_scaffold_2547_5
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(1625..2809)
DNA (1185bp) protein (395aa)
hypothetical protein; K02004 putative ABC transport system permease protein id=5045284 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein; K02004 putative ABC transport system permease protein Tax=AR18
hypothetical protein
rifcsphigho2_02_scaffold_2547_6
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2806..3987)
DNA (1182bp) protein (394aa)
Uncharacterized protein n=3 Tax=Methanococcus maripaludis RepID=A4FZ02_METM5 id=5103793 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative uncharacterized protein Tax=AR17
hypothetical protein
rifcsphigho2_02_scaffold_2547_7
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(3984..5288)
DNA (1305bp) protein (435aa)
hypothetical protein id=5047429 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein Tax=AR4
hypothetical protein
rifcsphigho2_02_scaffold_2547_8

Not on your lists

comp(5285..5974)
DNA (690bp) protein (230aa)
ABC transporter, ATPase subunit id=5800240 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ABC transporter, ATPase subunit {ECO:0000313|EMBL:AJF61571.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
ABC transport system protein
rifcsphigho2_02_scaffold_2547_9
RBG_16_Elusimicrobia_66_12_curated, Elusimicrobia, Bacteria

Not on your lists

6061..6702
DNA (642bp) protein (214aa)
putative phosphoribosyltransferase Tax=RBG_16_Elusimicrobia_66_12_curated
Phosphoribosyl transferase domain-containing protein id=3368093 bin=GWA2_Elusimicrobia_66_18 species=unknown genus=unknown taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
phosphoribosyltransferase
rifcsphigho2_02_scaffold_2547_10
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(6898..7245)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003790562
hypothetical protein Tax=RBG_13_Woesearchaeota_36_6_curated
rifcsphigho2_02_scaffold_2547_11
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7242..8075)
DNA (834bp) protein (278aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FY83_STIAD
short-chain dehydrogenase/reductase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADO68620.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatell
rifcsphigho2_02_scaffold_2547_12
unknown

Not on your lists

comp(8231..8563)
DNA (333bp) protein (111aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2547_13
unknown

Not on your lists

comp(8563..8865)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035FC8D5
rifcsphigho2_02_scaffold_2547_trna_1
unknown

Not on your lists

comp(9009..9110)
DNA (102bp)
transferRNA
rifcsphigho2_02_scaffold_2547_14
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

Not on your lists

comp(9126..10523)
DNA (1398bp) protein (466aa)
Putative Na(+)/H(+) antiporter n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W0D7_UNCMA
putative Na(+)/H(+) antiporter
Tax=BJP_IG2103_Bacteroidetes_37_22
rifcsphigho2_02_scaffold_2547_15
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

10613..11830
DNA (1218bp) protein (406aa)
hypothetical protein Tax=CG_Woesearch_02
hypothetical protein id=5048642 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_2547_16
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(11827..12546)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035F3B8D
hypothetical protein Tax=CG_Woesearch_02
rifcsphigho2_02_scaffold_2547_17
unknown

Not on your lists

12657..12977
DNA (321bp) protein (107aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2547_18
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12980..15493)
DNA (2514bp) protein (838aa)
alaS; alanine--tRNA ligase/alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase Tax=AR11
Alanine--tRNA ligase id=5799660 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_2547_19

Not on your lists

comp(15538..16122)
DNA (585bp) protein (195aa)
hypothetical protein id=5046911 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45857.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
phosphatidate cytidylyltransferase
rifcsphigho2_02_scaffold_2547_20
AR6, Pacearchaeaota, DPANN, Archaea

Not on your lists

comp(16101..16670)
DNA (570bp) protein (190aa)
phosphoesterase PA-phosphatase-like protein Tax=AR6
phosphoesterase id=5049617 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Membrane-associated phospholipid phosphatase
rifcsphigho2_02_scaffold_2547_21
unknown

Not on your lists

16800..16889
DNA (90bp) protein (30aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2547_22
R_RIF_OD1_08_38_39, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

17218..18951
DNA (1734bp) protein (578aa)
DNA polymerase X family / putative histidinol phosphatase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46C05_METBF id=5103471 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_08_38_39_curated
hypothetical protein
rifcsphigho2_02_scaffold_2547_23
Dehalococcoides sp. UCH007, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(19122..20450)
DNA (1329bp) protein (443aa)
Glycosyltransferase n=1 Tax=Dehalococcoides sp. (strain VS) RepID=D2BI29_DEHSV
glycosyl transferase family 1
DNA, complete genome {ECO:0000313|EMBL:BAQ34775.1}; TaxID=1522671 species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalococcoides sp.
rifcsphigho2_02_scaffold_2547_24
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


20698..23088
DNA (2391bp) protein (797aa)
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=5044349 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=AR5
valyl tRNA-synthetase (EC:6.1.1.9)
rifcsphigho2_02_scaffold_2547_25
RHI_Planctomycetes_42_15, Planctomycetes, Bacteria

Not on your lists

23150..23521
DNA (372bp) protein (124aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5ABP8_9FIRM
response regulator receiver modulated serine phosphatase Tax=RIFCSPHIGHO2_12_Planctomycetes_42_15_curated
response regulator receiver protein
rifcsphigho2_02_scaffold_2547_26
RIFOXYA2_FULL_Elusimicrobia_47_53_curated, Elusimicrobia, Bacteria

Not on your lists

23536..25302
DNA (1767bp) protein (589aa)
Putative two-component sensor histidine kinase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZP8_ANATU
His Kinase A (phosphoacceptor) domain protein Tax=RIFOXYA2_FULL_Elusimicrobia_47_53_curated
putative two-component sensor histidine kinase
rifcsphigho2_02_scaffold_2547_27
unknown

Not on your lists

comp(25309..26853)
DNA (1545bp) protein (515aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2547_28
unknown

Not on your lists

comp(26918..27103)
DNA (186bp) protein (62aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2547_29

Not on your lists

27235..27501
DNA (267bp) protein (89aa)
AbrB family transcriptional regulator {ECO:0000313|EMBL:KHO55228.1}; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
Displaying items 1-30 of 37 in total

View Taxonomy