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rifcsphigho2_02_scaffold_7473

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_7473_1
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(90..476)
DNA (387bp) protein (129aa)
NusA family KH domain-containing protein; K02600 N utilization substance protein A Tax=CG_Woesearch_02
transcription elongation factor NusA-like protein; K02600 N utilization substance protein A id=5043967 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
transcription elongation factor NusA-like protein
rifcsphigho2_02_scaffold_7473_2

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comp(506..769)
DNA (264bp) protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO53421.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
NEQ179 id=5799591 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L30e
rifcsphigho2_02_scaffold_7473_3
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(771..1901)
DNA (1131bp) protein (377aa)
DNA-directed RNA polymerase subunit A''; K03042 DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] Tax=CG_Woesearch_02
DNA-directed RNA polymerase subunit A'' id=5800703 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase subunit A''
rifcsphigho2_02_scaffold_7473_4
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(1909..4473)
DNA (2565bp) protein (855aa)
DNA-directed RNA polymerase, subunit a' (EC:2.7.7.6); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] Tax=CG_Woesearch_01
DNA-directed RNA polymerase subunit A' (EC:2.7.7.48); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] id=5043970 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
rifcsphigho2_02_scaffold_7473_5
unknown

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comp(4476..4859)
DNA (384bp) protein (128aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7473_6
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(4861..6660)
DNA (1800bp) protein (600aa)
rpoB2; DNA-directed RNA polymerase, subunit B' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] Tax=CG_Woesearch_01
rpoB2; DNA-directed RNA polymerase, subunit B' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] id=5043971 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
rifcsphigho2_02_scaffold_7473_7
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(6657..8138)
DNA (1482bp) protein (494aa)
DNA-directed RNA polymerase subunit B (EC:2.7.7.6); K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] Tax=RBG_13_Woesearchaeota_36_6_curated
DNA-directed RNA polymerase subunit B (EC:2.7.7.6); K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] id=5043972 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
rifcsphigho2_02_scaffold_7473_8
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(8131..8370)
DNA (240bp) protein (80aa)
DNA-directed RNA polymerase subunit H; K03053 DNA-directed RNA polymerase subunit H [EC:2.7.7.6] Tax=CG_Woesearch_01
DNA-directed RNA polymerase subunit H; K03053 DNA-directed RNA polymerase subunit H [EC:2.7.7.6] id=5043973 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase, subunit H
rifcsphigho2_02_scaffold_7473_9
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(9112..10551)
DNA (1440bp) protein (480aa)
hypothetical protein
transmembrane_regions Tax=CG_Woesearch_01
transmembrane_regions id=5043982 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_7473_trna_1
unknown

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comp(10721..10793)
DNA (73bp)
transferRNA
rifcsphigho2_02_scaffold_7473_10
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(10864..12924)
DNA (2061bp) protein (687aa)
SMC domain protein n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A5V4_NITMS id=5103605 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
SMC domain protein; K03546 exonuclease SbcC Tax=RBG_13_Woesearchaeota_36_6_curated
SMC protein
rifcsphigho2_02_scaffold_7473_11

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comp(12988..13977)
DNA (990bp) protein (330aa)
Bifunctional phosphoglucose/phosphomannose isomerase (Pgi-pmi) {ECO:0000313|EMBL:AIF00813.1}; EC=5.3.1.8 {ECO:0000313|EMBL:AIF00813.1};; TaxID=1457870 species="Archaea; Euryarchaeota; environmental sa
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI00037B4710
bifunctional phosphoglucose/phosphomannose isomerase
rifcsphigho2_02_scaffold_7473_12
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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14083..14916
DNA (834bp) protein (278aa)
ISA0963-4, putative transposase n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O28888_ARCFU
ISA0963-4 transposase
ISA0963-4, putative transposase {ECO:0000313|EMBL:AAB89862.1}; TaxID=224325 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus ful
Displaying 13 items

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