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rifoxyc2_full_scaffold_980

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifoxyc2_full_scaffold_980_1

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166..1491
DNA (1326bp) protein (442aa)
MiaB-like tRNA modifying enzyme id=5800532 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
MiaB-like protein tRNA modifying enzyme {ECO:0000313|EMBL:AJF61863.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
MiaB-like tRNA modifying enzyme
rifoxyc2_full_scaffold_980_2
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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1682..2485
DNA (804bp) protein (268aa)
mannose-1-phosphate guanylyltransferase (EC:2.7.7.13)
Nucleoside-diphosphate-sugar pyrophosphorylase family protein Tax=RBG_13_Woesearchaeota_36_6_curated
Nucleotidyl transferase id=5800752 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifoxyc2_full_scaffold_980_3

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2482..3834
DNA (1353bp) protein (451aa)
phosphomannomutase (EC:5.4.2.8); K01840 phosphomannomutase [EC:5.4.2.8] id=5048690 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Phosphomannomutase {ECO:0000313|EMBL:KHO45353.1}; EC=5.4.2.8 {ECO:0000313|EMBL:KHO45353.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
phosphomannomutase (EC:5.4.2.8)
rifoxyc2_full_scaffold_980_4
AR15, Woesearchaeaota, DPANN, Archaea

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comp(3836..4381)
DNA (546bp) protein (182aa)
hypothetical protein PelgB_23687 id=5800224 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein PelgB_23687 Tax=AR15
rifoxyc2_full_scaffold_980_5
R_OD1_Falkowbacteria_39_17, Falkowbacteria, Parcubacteria, Bacteria

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4463..4888
DNA (426bp) protein (142aa)
DNA mistmatch repair protein MutT n=1 Tax=Carnobacterium sp. WN1359 RepID=U5SAU4_9LACT
NUDIX family hydrolase Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_39_17_curated
DNA mistmatch repair protein MutT
rifoxyc2_full_scaffold_980_6

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comp(4875..5897)
DNA (1023bp) protein (341aa)
Probable tRNA threonylcarbamoyladenosine biosynthesis protein KAE1 homolog id=5800645 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized rbh
Putative tRNA threonylcarbamoyladenosine biosynthesis protein KAE1-like protein {ECO:0000313|EMBL:AJF61976.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
gcp; DNA-binding/iron metalloprotein/AP endonuclease
rifoxyc2_full_scaffold_980_7
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(5954..6376)
DNA (423bp) protein (141aa)
Uncharacterized protein Tax=RBG_13_Pacearchaeota_36_9_curated
id=2841798 bin=GWF2_Planctomycete_41_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
rifoxyc2_full_scaffold_980_8
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(6378..6575)
DNA (198bp) protein (66aa)
Succinyl-CoA synthetase (Alpha subunit) Tax=RBG_13_Pacearchaeota_36_9_curated
id=2841799 bin=GWF2_Planctomycete_41_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
rifoxyc2_full_scaffold_980_9
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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6680..6922
DNA (243bp) protein (81aa)
hypothetical protein Tax=RBG_16_Micrarchaeota_49_10_curated
hypothetical protein id=18248133 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
hypothetical protein
rifoxyc2_full_scaffold_980_10
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6981..7724
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WQQ2_METH6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET65686.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta harundi
rifoxyc2_full_scaffold_980_11
unknown

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comp(7767..7922)
DNA (156bp) protein (52aa)

This feature has no annotations

rifoxyc2_full_scaffold_980_12
RIFOXYD2_FULL_OD1_52_8_curated, Parcubacteria, Bacteria

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comp(13448..14131)
DNA (684bp) protein (228aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64) Tax=RIFOXYD2_FULL_OD1_52_8_curated
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J6E9_MARPK
methylase
rifoxyc2_full_scaffold_980_13
unknown

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comp(14112..14486)
DNA (375bp) protein (125aa)

This feature has no annotations

rifoxyc2_full_scaffold_980_14

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14607..15356
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000362FDBE
Transcriptional regulator TrmB {ECO:0000313|EMBL:KHO45479.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
transcriptional regulator TrmB
rifoxyc2_full_scaffold_980_15
RIFOXYC1_FULL_Bdellovibrionales_37_79_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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15353..15976
DNA (624bp) protein (208aa)
endonuclease III-like protein (EC:4.2.99.18); K07457 endonuclease III related protein Tax=RIFOXYC1_FULL_Bdellovibrionales_37_79_curated
HhH-GPD family protein; K07457 endonuclease III related protein id=5048692 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Endonuclease III
rifoxyc2_full_scaffold_980_16

Not on your lists

comp(15973..16347)
DNA (375bp) protein (125aa)
Uncharacterized protein id=5800782 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF62112.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
hypothetical protein
rifoxyc2_full_scaffold_980_17
unknown

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comp(16344..16676)
DNA (333bp) protein (111aa)

This feature has no annotations

rifoxyc2_full_scaffold_980_18
Tetrahymena thermophila, Tetrahymena, Hymenostomatida, Oligohymenophorea, Eukaryota

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17038..18561
DNA (1524bp) protein (508aa)
Protein kinase domain containing protein n=1 Tax=Tetrahymena thermophila (strain SB210) RepID=I7MJ53_TETTS
Kinase domain protein {ECO:0000313|EMBL:EAR95972.1}; TaxID=312017 species="Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Hymenostomatida; Tetrahymenina; Tetrahymenidae; Tetr
smc domain-containing protein
rifoxyc2_full_scaffold_980_19
unknown

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18605..18721
DNA (117bp) protein (39aa)

This feature has no annotations

rifoxyc2_full_scaffold_980_20

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18942..19142
DNA (201bp) protein (67aa)
secE; preprotein translocase subunit SecE; K07342 protein transport protein SEC61 subunit gamma and related proteins id=5043663 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; Protein transport protein Sec61 gamma subunit homolog {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1579365 species="Archaea.;" source="a
Preprotein translocase subunit SecE
rifoxyc2_full_scaffold_980_21

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19123..19617
DNA (495bp) protein (165aa)
NusG antitermination factor; K02601 transcriptional antiterminator NusG id=5043662 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Transcription elongation factor Spt5 {ECO:0000256|HAMAP-Rule:MF_00950}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
LSU ribosomal protein L24A Rpl24A
rifoxyc2_full_scaffold_980_22

Not on your lists


19629..20363
DNA (735bp) protein (245aa)
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 id=5043660 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Large subunit ribosomal protein L11 {ECO:0000313|EMBL:KHO46636.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L11
DPANN Jill Banfield (12/4/14)
rifoxyc2_full_scaffold_980_23
unknown

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20464..20946
DNA (483bp) protein (161aa)

This feature has no annotations

rifoxyc2_full_scaffold_980_24
AR15, Woesearchaeaota, DPANN, Archaea

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20959..21177
DNA (219bp) protein (73aa)
seg id=5800541 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
seg Tax=AR15
rifoxyc2_full_scaffold_980_25
unknown

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21158..21757
DNA (600bp) protein (200aa)

This feature has no annotations

rifoxyc2_full_scaffold_980_26
Methanothermococcus okinawensis, Methanothermococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(21754..22461)
DNA (708bp) protein (236aa)
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147};; Triose-phosphate isomerase {ECO:0000256|HAMAP-
Triosephosphate isomerase n=1 Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8ALV1_METOI
rifoxyc2_full_scaffold_980_27

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comp(22511..23155)
DNA (645bp) protein (215aa)
UPI000038E2D0 related cluster id=5800598 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61929.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
conserved archaeal protein, aspartokinase domain protein
rifoxyc2_full_scaffold_980_28
unknown

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23264..24109
DNA (846bp) protein (282aa)

This feature has no annotations

rifoxyc2_full_scaffold_980_29
Vulcanisaeta moutnovskia, Vulcanisaeta, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

24302..24931
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) RepID=A8MD03_CALMQ
Uncharacterized protein {ECO:0000313|EMBL:ADY00392.1}; TaxID=985053 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Vulcanisaeta.;" source="Vulcanisaeta moutnovskia (
rifoxyc2_full_scaffold_980_30
unknown

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comp(24912..25205)
DNA (294bp) protein (98aa)

This feature has no annotations

Displaying items 1-30 of 62 in total

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