ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

08E140C01_scaffold_5679

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_scaffold_5679_trna_1
unknown

Not on your lists

comp(196..282)
DNA (87bp)
transferRNA
08E140C01_scaffold_5679_1
BJP_08E140C01_OD1_43_7, Parcubacteria, Bacteria

Not on your lists

comp(289..999)
DNA (711bp) protein (237aa)
Pseudouridine synthase id=1816904 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
ribosomal large subunit pseudouridine synthase B
Tax=BJP_08E140C01_OD1_43_7
08E140C01_scaffold_5679_2
BJP_08E140C01_OD1_43_7, Parcubacteria, Bacteria

Not on your lists

comp(996..2366)
DNA (1371bp) protein (457aa)
Membrane protein id=1816902 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
O-antigen polymerase
Tax=BJP_08E140C01_OD1_43_7
08E140C01_scaffold_5679_3
BJP_08E140C01_OD1_43_7, Parcubacteria, Bacteria

Not on your lists

comp(2447..3010)
DNA (564bp) protein (188aa)
Elongation factor P id=1816730 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
translation elongation factor P
Tax=BJP_08E140C01_OD1_43_7
08E140C01_scaffold_5679_4
BJP_08E140C01_OD1_43_7, Parcubacteria, Bacteria

Not on your lists


comp(3027..3239)
DNA (213bp) protein (71aa)
30S ribosomal protein S18 id=1816773 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
rpsR; ribosomal protein S18
Tax=BJP_08E140C01_OD1_43_7
08E140C01_scaffold_5679_5
BJP_08E140C01_OD1_43_7, Parcubacteria, Bacteria

Not on your lists

comp(3267..3737)
DNA (471bp) protein (157aa)
Single-stranded DNA-binding protein id=1816776 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
single-strand binding protein
Tax=BJP_08E140C01_OD1_43_7
08E140C01_scaffold_5679_6
BJP_08E140C01_OD1_43_7, Parcubacteria, Bacteria

Not on your lists


comp(3788..4291)
DNA (504bp) protein (168aa)
30S ribosomal protein S6 id=1816778 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
rpsF; 30S ribosomal protein S6
Tax=BJP_08E140C01_OD1_43_7
08E140C01_scaffold_5679_7
BJP_08E140C01_OD1_43_7, Parcubacteria, Bacteria

Not on your lists

4545..5723
DNA (1179bp) protein (393aa)
putative DNA methylase
predicted DNA methylase id=1816781 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria) rbh
Tax=BJP_08E140C01_OD1_43_7
08E140C01_scaffold_5679_8
BJP_08E140C01_OD1_43_7, Parcubacteria, Bacteria

Not on your lists

5734..6267
DNA (534bp) protein (178aa)
Tax=BJP_08E140C01_OD1_43_7
08E140C01_scaffold_5679_9
BJP_08E140C01_OD1_43_7, Parcubacteria, Bacteria

Not on your lists

comp(6321..7385)
DNA (1065bp) protein (355aa)
GTP-binding protein YchF id=1981127 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
engD; GTP-dependent nucleic acid-binding protein EngD
Tax=BJP_08E140C01_OD1_43_7
Displaying 10 items

View Taxonomy