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RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_1
R_OD1_Nomurabacteria_37_25, Nomurabacteria, Parcubacteria, Bacteria

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950..1432
DNA (483bp) protein (161aa)
site-specific DNA endonuclease Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_37_25_curated
Homing endonuclease id=2722907 bin=GWC1_OD1_38_17 species=Synechococcus sp. C9 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
site-specific DNA endonuclease
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_2
unknown

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1532..1726
DNA (195bp) protein (65aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_3
unknown

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1918..2109
DNA (192bp) protein (64aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_4
R_OD1_Nomurabacteria_42_17, Nomurabacteria, Parcubacteria, Bacteria

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2885..3667
DNA (783bp) protein (261aa)
transmembrane_regions Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_42_17_curated
transmembrane_regions id=5226873 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_5
GWB1_OD1_36_5, Parcubacteria, Bacteria

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3672..4802
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVE8_9BACT
Rod shape-determining protein Tax=GWB1_OD1_36_5
rod shape-determining protein RodA
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_6
GWB1_OD1_36_5, Parcubacteria, Bacteria

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4845..5696
DNA (852bp) protein (284aa)
folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] id=5226875 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD Tax=GWB1_OD1_36_5
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_7
R_OD1_Nomurabacteria_39_18, Nomurabacteria, Parcubacteria, Bacteria

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5693..6220
DNA (528bp) protein (176aa)
Phosphatase n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZG5_9BACT
bcrC1; bacitracin transporter permease BcrC Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_39_18_curated
Bacitracin transport permease protein BCRC
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_8
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

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6293..7654
DNA (1362bp) protein (454aa)
Preprotein translocase subunit SecD n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVB5_9BACT
protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
secD; preprotein translocase subunit SecD
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_9
R_OD1_Nomurabacteria_41_12, Nomurabacteria, Parcubacteria, Bacteria

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7659..8594
DNA (936bp) protein (312aa)
protein-export membrane protein SecF; K03074 preprotein translocase subunit SecF Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_41_12_curated
Protein-export membrane protein SecF id=5226878 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
protein-export membrane protein SecF
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_10
R_OD1_Nomurabacteria_39_18, Nomurabacteria, Parcubacteria, Bacteria

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8609..9097
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FZQ2_9BACT
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_39_18_curated
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_11
GWB1_OD1_40_7, Nomurabacteria, Parcubacteria, Bacteria

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9150..9422
DNA (273bp) protein (91aa)
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] id=5803069 bin=OD1_GWC2_34_28 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C Tax=GWB1_OD1_40_7
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_12
unknown

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9425..9523
DNA (99bp) protein (33aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_13
R_OD1_Nomurabacteria_37_25, Nomurabacteria, Parcubacteria, Bacteria

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9527..10942
DNA (1416bp) protein (472aa)
glutamyl-tRNA(Gln) amidotransferase subunit A; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=5803067 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
gatA2; glutamyl-tRNA(Gln) amidotransferase subunit A GatA2 Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_37_25_curated
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_14
Parcubacteria bacterium GW2011_GWC1_35_8, Parcubacteria, Bacteria

Not on your lists

10971..11627
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZ96_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKP87205.1}; TaxID=1618893 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_35_8.;"
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_15
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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12330..13391
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DGQ0_9BACT
membrane protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
membrane protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_16
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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13459..14343
DNA (885bp) protein (295aa)
Peptide chain release factor 2 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWL6_9BACT
prfB; peptide chain release factor 2; K02836 peptide chain release factor 2 Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
peptide chain release factor 2
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_17
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

14468..15175
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXU9_9BACT
FtsE; cell division ATPase; K09812 cell division transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
ftsE; cell division ATP-binding protein FtsE
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_11174_18
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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15208..15750
DNA (543bp) protein (181aa)
membrane protein of unknown function Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
Cell division protein FtsX id=5227276 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
Displaying 18 items

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