ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_1
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(530..901)
DNA (372bp) protein (124aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_2
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(955..2025)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z2W3_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_3
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

2250..3476
DNA (1227bp) protein (409aa)
thiamine biosynthesis/tRNA modification protein thii; K03151 thiamine biosynthesis protein ThiI Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Probable tRNA sulfurtransferase id=2648838 bin=GWC1_OD1_38_17 species=Collinsella aerofaciens genus=Collinsella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
thiamine biosynthesis/tRNA modification protein thii
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_4
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(3486..3863)
DNA (378bp) protein (126aa)
thioredoxin Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
VKORC1/thioredoxin domain protein id=4242293 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_5
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(3856..4356)
DNA (501bp) protein (167aa)
hypothetical protein
Putative uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Putative uncharacterized protein id=4242295 bin=GWC2_OD1_43_27 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_6
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(4391..5173)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037B95B7
cytochrome c biogenesis protein, transmembrane region Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
cytochrome c biogenesis transmembrane protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_7
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(5286..5813)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000371892C
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_8
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(5878..6348)
DNA (471bp) protein (157aa)
Cytoplasmic protein n=1 Tax=Thermotoga sp. EMP RepID=J9H3Q1_9THEM
hemerythrin hhE cation-binding domain-containing protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
cytoplasmic protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_9
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(6450..6656)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. NIPH 899 RepID=N8VI73_9GAMM
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_10
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(6801..7205)
DNA (405bp) protein (135aa)
mannose-6-phosphate isomerase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Uncharacterized protein id=3486006 bin=GWA1_ZB2_49_26 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
mannose-6-phosphate isomerase
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_11
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(7312..9024)
DNA (1713bp) protein (571aa)
Radical SAM domain-containing protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Radical SAM domain protein id=2636198 bin=GWC1_Spirochaetes_27_15 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
Radical SAM domain-containing protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_12
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(9081..9377)
DNA (297bp) protein (99aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_13
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(9374..9670)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003622305
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_14
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(9920..12601)
DNA (2682bp) protein (894aa)
tpd:Teth39_0231 calcium-translocating P-type ATPase, PMCA-type; K01537 Ca2+-transporting ATPase [EC:3.6.3.8] id=133947 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
calcium-translocating P-type ATPase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
calcium-translocating P-type ATPase
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_15
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(12866..13027)
DNA (162bp) protein (54aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_20529_16
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(13159..14928)
DNA (1770bp) protein (590aa)
GTP-binding protein TypA/BipA Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
GTP-binding protein TypA/BipA id=2076499 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
GTP-binding protein TypA/BipA
Displaying 16 items

View Taxonomy