ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_1
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

25..558
DNA (534bp) protein (178aa)
hypothetical protein
Putative uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Putative uncharacterized protein id=2648833 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_2
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(606..797)
DNA (192bp) protein (64aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein id=3316 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_3
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(814..1740)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Hippea alviniae RepID=UPI0003B78DA3
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_4
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(1703..2842)
DNA (1140bp) protein (380aa)
id=3423179 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
id=3423179 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_5
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(2920..3198)
DNA (279bp) protein (93aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_6
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(3345..4214)
DNA (870bp) protein (290aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_7
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

4871..5563
DNA (693bp) protein (231aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_8
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

5682..6044
DNA (363bp) protein (121aa)
transmembrane_regions Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
transmembrane_regions id=5801226 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_9
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists


6193..7293
DNA (1101bp) protein (367aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=15190304 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_10
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

7297..7410
DNA (114bp) protein (38aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_11
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists


7416..9494
DNA (2079bp) protein (693aa)
phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036FB867
phenylalanyl-tRNA synthetase subunit beta
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_12
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

9632..11560
DNA (1929bp) protein (643aa)
DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
DNA gyrase subunit B (EC:5.99.1.3)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036520EF
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_13
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

11565..12053
DNA (489bp) protein (163aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Putative uncharacterized protein id=4838915 bin=GWC2_OD1_43_27 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_14
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

12408..13862
DNA (1455bp) protein (485aa)
Putative uncharacterized protein n=1 Tax=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) RepID=B5H2J6_STRC2
Putative uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_15
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

13894..14973
DNA (1080bp) protein (360aa)
Membrane dipeptidase n=1 Tax=Firmicutes bacterium CAG:449 RepID=R6R1I1_9FIRM
renal dipeptidase family protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
renal dipeptidase family protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_16
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

15137..15337
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000368D926
preprotein translocase, SecE subunit, bacterial Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
preprotein translocase, SecE subunit, bacterial
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_17
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

15618..16160
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000366B9C3
nusG; transcription antitermination factor Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
nusG; transcription antitermination factor
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_18
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists


16227..16649
DNA (423bp) protein (141aa)
50S ribosomal protein L11 n=1 Tax=uncultured bacterium RepID=K2EZQ6_9BACT
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
rplK; 50S ribosomal protein L11
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_19
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

16661..17236
DNA (576bp) protein (192aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase id=3422927 bin=GWA1_ZB2_49_26 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_20
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

17284..18951
DNA (1668bp) protein (556aa)
thyA; thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
thymidylate synthase; K00560 thymidylate synthase [EC:2.1.1.45] id=5044059 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
thyA; thymidylate synthase (EC:2.1.1.45)
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_21
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

19028..20302
DNA (1275bp) protein (425aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Pyridoxal-phosphate-dependent serine hydroxymethyltransferase id=5800684 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_22
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

20283..21107
DNA (825bp) protein (275aa)
methylenetetrahydrofolate dehydrogenase (NADP+) (EC:3.5.4.9) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
methylenetetrahydrofolate dehydrogenase (NADP+) (EC:3.5.4.9)
Bifunctional protein FolD n=1 Tax=uncultured bacterium RepID=K2EZY7_9BACT
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_23
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

21144..21344
DNA (201bp) protein (67aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_8683_24
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

21412..22956
DNA (1545bp) protein (515aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curate
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036D9163
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
Displaying 24 items

View Taxonomy