ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_1
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(2..316)
DNA (315bp) protein (105aa)
apt; adenine phosphoribosyltransferase; K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Adenine phosphoribosyltransferase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JYK8_DESAC
adenine phosphoribosyltransferase
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_2
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

351..578
DNA (228bp) protein (76aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_3
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

523..762
DNA (240bp) protein (80aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K03387 alkyl hydroperoxide reductase subunit F [EC:1.6.4.-] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
glutaredoxin id=3506688 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
glutaredoxin-like protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_4
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

781..1788
DNA (1008bp) protein (336aa)
gap; glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.-); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
gap; glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.-)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000375BCE0
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_5
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

1839..2303
DNA (465bp) protein (155aa)
ribose-5-phosphate isomerase B; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Putative ribose-5-phosphate isomerase B (Phosphoriboisomerase B) id=4838953 bin=GWC2_OD1_43_27 species=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
ribose-5-phosphate isomerase B
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_6
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

2394..3044
DNA (651bp) protein (217aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Ribulose-phosphate 3-epimerase id=3506678 bin=GWC1_OD1_38_17 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
ribulose-phosphate 3-epimerase
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_7
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

3041..3886
DNA (846bp) protein (282aa)
tktB; transketolase N-terminal domain protein (EC:2.2.1.1) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
transketolase n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B6E618
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_8
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

3879..4643
DNA (765bp) protein (255aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_9
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

5079..5495
DNA (417bp) protein (139aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_10
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

5499..5921
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EGC8_CLOPA
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_11
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

5926..6036
DNA (111bp) protein (37aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_12
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

6087..7454
DNA (1368bp) protein (456aa)
UPI0003D1A350 related cluster n=1 Tax=unknown RepID=UPI0003D1A350
UPI0003D1A350 related cluster Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_13
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

7519..8523
DNA (1005bp) protein (335aa)
transketolase; K00615 transketolase [EC:2.2.1.1] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Transketolase central region id=3506674 bin=GWC1_OD1_38_17 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
transketolase
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_14
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

8644..9627
DNA (984bp) protein (328aa)
putative Ribokinase (EC:2.7.1.15) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Carbohydrate kinase id=3506670 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
PfkB family kinase, nonfunctional
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_15
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

9632..10906
DNA (1275bp) protein (425aa)
id=3506668 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
id=3506668 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_16
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

10906..11001
DNA (96bp) protein (32aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_17
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

11024..11815
DNA (792bp) protein (264aa)
fbaB-1; fructose-bisphosphate aldolase (class I) (EC:4.1.2.13); K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
fbaB-1; fructose-bisphosphate aldolase (class I) (EC:4.1.2.13)
Fructose-bisphosphate aldolase 1 n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EF02_9EURY id=42771 bin=ACD37 species=Candidatus Parvarchaeum acidiphilum genus=Candidatus Parvarchaeum taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=ACD37 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_18
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

11833..12042
DNA (210bp) protein (70aa)
hypothetical protein; K05337 ferredoxin Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
4fe-4S ferredoxin IroN-sulfur binding domaiN-containing protein id=18248544 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
ferredoxin
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_19
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

12197..12913
DNA (717bp) protein (239aa)
ribosomal 5S rRNA E-loop-binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
ribosomal 5S rRNA E-loop-binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25 id=96195 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
ribosomal 5S rRNA E-loop-binding protein Ctc/L25/TL5
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_20
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

12925..14220
DNA (1296bp) protein (432aa)
peptidase M23 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Peptidase M23B id=2192990 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
peptidase M23
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_21
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

14313..14543
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Thermincola potens (strain JR) RepID=D5XA02_THEPJ
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_22
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

14544..15203
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-K06 RepID=UPI0003B4493E
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_23
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(15314..16228)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EZU7_9BACT
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_24
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(16335..18014)
DNA (1680bp) protein (560aa)
RNA-metabolising metallo-beta-lactamase; K12574 ribonuclease J [EC:3.1.-.-] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RNA-metabolising metallo-beta-lactamase id=3013277 bin=GWC1_OD1_38_17 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RNA-metabolising metallo-beta-lactamase
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_25
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

18262..18666
DNA (405bp) protein (135aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_26
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(18716..18928)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A570_9BACT
YcfA family protein; K07339 hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
YcfA family protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_27
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(18921..19169)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DAG6_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_28
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(19212..20804)
DNA (1593bp) protein (531aa)
putative ABC transporter substrate binding protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Extracellular solute-binding protein id=3544614 bin=GWC1_OD1_38_17 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
putative ABC transporter substrate binding protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_29
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(21090..21308)
DNA (219bp) protein (73aa)
Putative uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Putative uncharacterized protein id=3544615 bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2664_30
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(21436..21783)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EPQ6_9BACT
hypothetical protein; K08972 putative membrane protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein
Displaying items 1-30 of 39 in total

View Taxonomy