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RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_1
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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1..444
DNA (444bp) protein (148aa)
putative penicillin-binding protein; K05515 penicillin-binding protein 2 Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
penicillin-binding protein 2; K05515 penicillin-binding protein 2 id=5803382 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
penicillin-binding protein transpeptidase
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_2
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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comp(764..1030)
DNA (267bp) protein (89aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_3
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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1231..1701
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI000380D2AE
transcription elongation factor GreA; K03624 transcription elongation factor GreA Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
greA; transcription elongation factor GreA
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_4
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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1863..3326
DNA (1464bp) protein (488aa)
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037C5D03
lysyl-tRNA synthetase
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_5
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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3615..3827
DNA (213bp) protein (71aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_6
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

3818..4255
DNA (438bp) protein (146aa)
cell division protein MraZ; K03925 MraZ protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Protein MraZ id=5011448 bin=GWA2_Ignavibacteriae_54_16_partial species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
cell division protein MraZ
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_7
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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4280..5182
DNA (903bp) protein (301aa)
mraW; S-adenosyl-methyltransferase MraW (EC:2.1.1.-); K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
mraW; S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PYG7_9BACT
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_8
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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5179..5499
DNA (321bp) protein (107aa)
transmembrane_regions Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
transmembrane_regions id=5803434 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_9
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5512..7233
DNA (1722bp) protein (574aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
peptidoglycan glycosyltransferase (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] id=5803435 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
peptidoglycan glycosyltransferase (EC:2.4.1.129)
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_10
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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7503..8804
DNA (1302bp) protein (434aa)
murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF (EC:6.3.2.10) Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] id=5803436 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (EC:6.3.2.10)
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_11
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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comp(9442..10677)
DNA (1236bp) protein (412aa)
antimicrobial peptide ABC transporter permease Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
hypothetical protein; K02004 putative ABC transport system permease protein id=5802299 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
multidrug ABC transporter substrate-binding protein
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_12
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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comp(10683..11402)
DNA (720bp) protein (240aa)
antimicrobial peptide ABC transporter ATPase Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein id=5095696 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
antimicrobial peptide ABC transporter ATPase
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_13
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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comp(11404..12942)
DNA (1539bp) protein (513aa)
secretion protein HlyD; K02005 HlyD family secretion protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RND family efflux transporter MFP subunit id=5803398 bin=OD1_GWC2_34_28 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
secretion protein HlyD
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_14
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(13254..13574)
DNA (321bp) protein (107aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_52769_15
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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comp(13756..14094)
DNA (339bp) protein (113aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Displaying 15 items

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