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RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_1
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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2..127
DNA (126bp) protein (42aa)
Putative uncharacterized protein Tax=GWA1_OD1_43_15
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_2

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129..818
DNA (690bp) protein (230aa)
DSBA oxidoreductase {ECO:0000313|EMBL:KKT62039.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
DsbA oxidoreductase id=4800153 bin=GWC2_OD1_43_27 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
DSBA oxidoreductase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_3

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821..1432
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037064D4
Uncharacterized protein {ECO:0000313|EMBL:KKT62040.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_4

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1434..2402
DNA (969bp) protein (323aa)
Alkyl hydroperoxide reductase subunit F {ECO:0000313|EMBL:KKT62041.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Alkyl hydroperoxide reductase, F subunit id=4800149 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Alkyl hydroperoxide reductase subunit F
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_5

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2442..3416
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000378059E
Glyceraldehyde-3-phosphate dehydrogenase, type I {ECO:0000313|EMBL:KKT62042.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26
Glyceraldehyde-3-phosphate dehydrogenase, type I
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_6

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3421..3729
DNA (309bp) protein (103aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62043.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_7

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3726..4166
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000363FB2C
Ribose 5-phosphate isomerase rpib {ECO:0000313|EMBL:KKS95189.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
ribose-5-phosphate isomerase B
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_8
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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4182..5825
DNA (1644bp) protein (548aa)
CTP synthase (EC:6.3.4.2)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000380A0F3
CTP synthetase {ECO:0000313|EMBL:KKT21372.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_9
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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5818..6471
DNA (654bp) protein (218aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase Tax=GWA1_OD1_43_15
Ribulose-phosphate 3-epimerase id=3506678 bin=GWC1_OD1_38_17 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_10
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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6443..6655
DNA (213bp) protein (71aa)
Tax=GWA1_OD1_43_15
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_11
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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6603..7178
DNA (576bp) protein (192aa)
Putative uncharacterized protein Tax=GWA1_OD1_43_15
hypothetical protein id=5090791 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_12
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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7184..7372
DNA (189bp) protein (63aa)
Tax=GWA1_OD1_43_15
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_13
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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7375..8235
DNA (861bp) protein (287aa)
tktB; transketolase N-terminal domain protein (EC:2.2.1.1)
Transketolase domain protein {ECO:0000313|EMBL:KKT21370.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
Transketolase domain protein id=4790066 bin=GWC2_OD1_43_27 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_14
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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8464..9492
DNA (1029bp) protein (343aa)
Putative transketolase C-terminal section (TK) Tax=GWA1_OD1_43_15
Putative transketolase C-terminal section (TK) id=4790069 bin=GWC2_OD1_43_27 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
transketolase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_15
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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9494..10489
DNA (996bp) protein (332aa)
carbohydrate kinase PfkB; K00852 ribokinase [EC:2.7.1.15] id=5803344 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Sugar kinase, ribokinase family (Fragment) Tax=GWA1_OD1_43_15
Sugar kinase, ribokinase family
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_16

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10486..11343
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003655BCC
Ketose-bisphosphate aldolase, class-II {ECO:0000313|EMBL:KKT62053.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_17
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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11351..12322
DNA (972bp) protein (324aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT20457.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein id=3506657 bin=GWC1_OD1_38_17 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_18

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12382..13101
DNA (720bp) protein (240aa)
50S ribosomal protein L25 {ECO:0000313|EMBL:KKS95177.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25 id=15189720 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_19

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13094..14395
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035E26E1
Uncharacterized protein {ECO:0000313|EMBL:KKT62056.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_20

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comp(14404..15345)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037D6332
Peptide chain release factor 1 {ECO:0000313|EMBL:KKS95175.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
prfA; peptide chain release factor 1
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_21
unknown

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comp(15342..15485)
DNA (144bp) protein (48aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_22
R_OD1_Giovannonibacteria_46_32, Giovannonibacteria, Parcubacteria, Bacteria

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comp(15489..15695)
DNA (207bp) protein (69aa)
50S ribosomal protein L31 n=1 Tax=delta proteobacterium NaphS2 RepID=D8F495_9DELT
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_46_32_curated
50S ribosomal protein L31
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_23

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15758..16483
DNA (726bp) protein (242aa)
30S ribosomal protein S2 {ECO:0000313|EMBL:KKT62058.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 id=5803360 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rpsB; 30S ribosomal protein S2
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_24
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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16480..16932
DNA (453bp) protein (151aa)
Elongation factor Ts Tax=GWA1_OD1_43_15
Elongation factor Ts id=4209203 bin=GWF2_CPR3_35_18 species=ACD37 genus=ACD37 taxon_order=ACD37 taxon_class=ACD37 phylum=OP11 tax=GWF2_CPR3_35_18 organism_group=CPR3
tsf; translation elongation factor Ts
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_25

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16935..17261
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62060.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_26
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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17376..17624
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A580_9BACT
Excinuclease ABC C subunit domain protein Tax=GWA1_OD1_43_15
excinuclease ABC C subunit domain-containing protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_27

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comp(17939..18424)
DNA (486bp) protein (162aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT61987.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
seg id=5802686 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_28
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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18488..19756
DNA (1269bp) protein (423aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KKT20900.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_
Pyridine nucleotide-disulfide oxidoreductase family protein id=2824586 bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_29
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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19768..21087
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2ED73_9BACT
Cysteine desulfurase {ECO:0000313|EMBL:KKT20901.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
cysteine desulfurase NifS
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_5789_30
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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21090..21749
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EC02_9BACT
Nitrogen-fixing NifU domain protein {ECO:0000313|EMBL:KKT20902.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
nitrogen-fixing NifU domain-containing protein
Displaying items 1-30 of 35 in total

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