ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_1
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

1..999
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037E6103
Putative uncharacterized protein Tax=GWA1_OD1_43_15
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_2

Not on your lists

comp(1030..1641)
DNA (612bp) protein (204aa)
Elongation factor P {ECO:0000313|EMBL:KKT63411.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Elongation factor P id=4242105 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
translation elongation factor P
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_3

Not on your lists

1667..3106
DNA (1440bp) protein (480aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00036DDDF2
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000313|EMBL:KKT63410.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_
glutamyl-tRNA(Gln) amidotransferase subunit B
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_4
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(3075..4043)
DNA (969bp) protein (323aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] id=5803396 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase 2 {ECO:0000313|EMBL:KKT21683.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_5
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(4025..5230)
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037B17FF
Threonine-tRNA ligase {ECO:0000313|EMBL:KKT21682.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
Threonine-tRNA ligase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_6

Not on your lists

5373..5567
DNA (195bp) protein (65aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63407.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_7

Not on your lists

comp(6188..6478)
DNA (291bp) protein (97aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63406.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_8

Not on your lists

comp(6475..6819)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1WYC9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKT63405.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_9

Not on your lists

comp(6842..10111)
DNA (3270bp) protein (1090aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000370808A
Polymerase III alpha subunit protein {ECO:0000313|EMBL:KKT63404.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_10
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

10177..10761
DNA (585bp) protein (195aa)
ribonuclease H (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PW76_9BACT
Ribonuclease HII Tax=GWA1_OD1_43_15
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_11

Not on your lists

10801..11091
DNA (291bp) protein (97aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63402.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_12

Not on your lists

11108..11524
DNA (417bp) protein (139aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63401.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_13
GWC2_OD1_44_9, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


11614..11850
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035F3F5F
50S ribosomal protein L32 {ECO:0000313|EMBL:KKT83300.1}; TaxID=1618658 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_44_9.;"
50S ribosomal protein L32
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_14
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

11908..12843
DNA (936bp) protein (312aa)
NusB antitermination factor Tax=GWA1_OD1_43_15
NusB antitermination factor; K03625 N utilization substance protein B id=5226910 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
putative transcription termination factor
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_15
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

12846..13559
DNA (714bp) protein (238aa)
Ribonuclease 3 Tax=GWA1_OD1_43_15
Ribonuclease 3 id=1924346 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_16
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

13561..15735
DNA (2175bp) protein (725aa)
Chromosome partition protein Smc Tax=GWA1_OD1_43_15
Smc; chromosome segregation ATPase; K03529 chromosome segregation protein id=5803429 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
chromosome segregation protein SMC
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_17

Not on your lists

comp(15736..16677)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z2W3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKS95957.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_18

Not on your lists

16806..17279
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63396.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_19

Not on your lists

comp(17353..17781)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00036554EC
Uncharacterized protein {ECO:0000313|EMBL:KKT63395.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_20

Not on your lists

comp(17786..19933)
DNA (2148bp) protein (716aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000373872C
Uncharacterized protein {ECO:0000313|EMBL:KKS95954.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_21

Not on your lists

comp(19938..20195)
DNA (258bp) protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63393.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_22
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(20251..21165)
DNA (915bp) protein (305aa)
hypothetical protein
Putative uncharacterized protein Tax=GWA1_OD1_43_15
Putative uncharacterized protein id=3737006 bin=GWC2_OD1_43_27 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_23

Not on your lists

comp(21182..21553)
DNA (372bp) protein (124aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63391.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_24
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(21558..22340)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037B95B7
Putative uncharacterized protein Tax=GWA1_OD1_43_15
cytochrome c biogenesis transmembrane protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_25
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(22345..22848)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000371892C
Uncharacterized protein {ECO:0000313|EMBL:KKT21663.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_26
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22907..23278)
DNA (372bp) protein (124aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_27
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

23299..24474
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00036F8AFA
tRNA-specific 2-thiouridylase MnmA Tax=GWA1_OD1_43_15
tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_28

Not on your lists

24520..24903
DNA (384bp) protein (128aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63387.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_29

Not on your lists


24969..26675
DNA (1707bp) protein (569aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037B0FAE
Alanine-tRNA ligase {ECO:0000313|EMBL:KKT63386.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Alanine-tRNA ligase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_2143_30

Not on your lists

26746..27372
DNA (627bp) protein (209aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63385.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Displaying items 1-30 of 42 in total

View Taxonomy