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RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172

Search features with annotation key words

Displaying items 1-30 of 164 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_1
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(194..556)
DNA (363bp) protein (121aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_2
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(746..1087)
DNA (342bp) protein (114aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_3
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(1093..1656)
DNA (564bp) protein (188aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_4
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(1653..2195)
DNA (543bp) protein (181aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_5
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2207..3175)
DNA (969bp) protein (323aa)
Type IV pilus assembly protein PilM Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
Type IV pilus assembly protein PilM id=5227483 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_6
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3216..3824)
DNA (609bp) protein (203aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
hypothetical protein; K03975 membrane-associated protein id=5227482 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_7
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3887..4273)
DNA (387bp) protein (129aa)
RNAse H-fold protein YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] id=5803259 bin=OD1_GWC2_34_28 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RNAse H-fold protein YqgF
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_8
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

4581..5006
DNA (426bp) protein (142aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_9
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5006..5527
DNA (522bp) protein (174aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_10
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5664..6128
DNA (465bp) protein (155aa)
Putative uncharacterized protein Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
Putative uncharacterized protein id=3305474 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_11
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

6218..7513
DNA (1296bp) protein (432aa)
eno; enolase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11] Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
enolase (EC:4.2.1.11)
Enolase id=1263657 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_12
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


comp(7606..7869)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
30S ribosomal protein S20 id=2934184 bin=GWC1_OD1_38_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_13
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

8007..8579
DNA (573bp) protein (191aa)
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] id=5803226 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Holliday junction DNA helicase RuvA
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_14
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

8640..9953
DNA (1314bp) protein (438aa)
UDP-N-acetylmuramyl tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
UDP-N-acetylmuramyl-tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] id=5803224 bin=OD1_GWC2_34_28 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
UDP-N-acetylmuramyl tripeptide synthetase
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_15
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(9963..11213)
DNA (1251bp) protein (417aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_16
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

11346..12359
DNA (1014bp) protein (338aa)
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase id=3305455 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_17
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(12336..12821)
DNA (486bp) protein (162aa)
tRNA/rRNA methyltransferase (EC:2.1.1.-) Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
spoU; RNA methylase (EC:2.1.1.-)
tRNA/rRNA methyltransferase SpoU id=5803222 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_18
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

12910..13278
DNA (369bp) protein (123aa)
Uncharacterised protein family YphA Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
Uncharacterised protein family YphA id=5803221 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_19
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(13491..14219)
DNA (729bp) protein (243aa)
id=5803220 Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
id=5803220 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_20
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(14282..16921)
DNA (2640bp) protein (880aa)
polA; DNA polymerase I (EC:2.7.7.7) Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
polA; DNA polymerase I (EC:2.7.7.7)
UPI0003D5EED8 related cluster n=1 Tax=unknown RepID=UPI0003D5EED8
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_21
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(16936..17448)
DNA (513bp) protein (171aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
hypothetical protein; K06925 UPF0079 ATP-binding protein id=5803216 bin=OD1_GWC2_34_28 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_22
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(17534..18115)
DNA (582bp) protein (194aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_23
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

18308..19978
DNA (1671bp) protein (557aa)
type IV pilus assembly protein; K02652 type IV pilus assembly protein PilB Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
pilB1; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB id=5803215 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type IV pilus assembly protein
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_24
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

20031..20288
DNA (258bp) protein (86aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_25
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

20591..21601
DNA (1011bp) protein (337aa)
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] id=5803214 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Holliday junction DNA helicase RuvB
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_26
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(21678..21830)
DNA (153bp) protein (51aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_27
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

21961..22491
DNA (531bp) protein (177aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
YebC/PmpR family DNA-binding regulatory protein id=5803211 bin=OD1_GWC2_34_28 species=unknown genus=Fervidobacterium taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_28
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(22522..22797)
DNA (276bp) protein (92aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_29
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(22877..23356)
DNA (480bp) protein (160aa)
ruvC; Holliday junction resolvase; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
ruvC; crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] id=5803209 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ruvC; Holliday junction resolvase
RIFCSPHIGHO2_01_FULL_OD1_44_110_rifcsphigho2_01_scaffold_172_30
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

23443..25977
DNA (2535bp) protein (845aa)
1A family penicillin-binding protein Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
putative penicillin-binding protein id=5803206 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
1A family penicillin-binding protein
Displaying items 1-30 of 164 in total

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