ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_1
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

2..895
DNA (894bp) protein (298aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_2
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(949..1170)
DNA (222bp) protein (74aa)
iron transporter n=1 Tax=Rickettsiaceae bacterium Os18 RepID=UPI000364EB8D
GI14603 gene product from transcript GI14603-RA Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
NifU-like hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_3
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(1381..2007)
DNA (627bp) protein (209aa)
sodA; superoxide dismutase, Mn (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
Superoxide dismutase (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] id=14423813 bin=bin11_novelCP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin11_novelCP organism_group=Unknown_CP
sodA; superoxide dismutase (EC:1.15.1.1)
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_4
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(2093..3034)
DNA (942bp) protein (314aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_5
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(3115..3369)
DNA (255bp) protein (85aa)
ferredoxin n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B30A29
iron-sulfur protein; K05337 ferredoxin Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_6
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(3315..3731)
DNA (417bp) protein (139aa)
NifU family SUF system FeS assembly protein n=1 Tax=Thermoplasmatales archaeon Gpl RepID=T0MZ74_9EURY
FeS cluster assembly scaffold protein NifU; K04488 nitrogen fixation protein NifU and related proteins Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
FeS cluster assembly scaffold protein NifU
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_7
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(3758..4966)
DNA (1209bp) protein (403aa)
SufS subfamily cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
Cysteine desulfurase n=2 Tax=Thermoanaerobacter RepID=C7IV89_THEET
SufS subfamily cysteine desulfurase
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_8
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(4972..5565)
DNA (594bp) protein (198aa)
FeS assembly protein SufD n=3 Tax=Sulfolobus islandicus RepID=C3NE17_SULIY
hypothetical protein; K07033 Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
FeS assembly protein SufD
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_9
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(5567..6961)
DNA (1395bp) protein (465aa)
FeS assembly protein SufB n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3Z1_SPHTD
FeS assembly protein SufB; K09014 Fe-S cluster assembly protein SufB Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
Iron-regulated ABC transporter membrane component SufB
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_10
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(6943..7677)
DNA (735bp) protein (245aa)
FeS assembly ATPase SufC n=1 Tax=Thermosipho africanus (strain TCF52B) RepID=B7IFA5_THEAB
sufC; FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
sufC; FeS assembly ATPase SufC
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_11
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(7711..8943)
DNA (1233bp) protein (411aa)
NADH dehydrogenase (ubiquinone) (EC:1.6.5.3); K03885 NADH dehydrogenase [EC:1.6.99.3] Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
Pyridine nucleotide-disulfide oxidoreductase family protein id=2824586 bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
NADH dehydrogenase (ubiquinone)
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_12
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

9032..9559
DNA (528bp) protein (176aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_13
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

9596..10033
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003612B46
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_14
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(10151..10609)
DNA (459bp) protein (153aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_15
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(10617..11066)
DNA (450bp) protein (150aa)
Elongation factor Ts n=1 Tax=uncultured bacterium RepID=K2CJA9_9BACT
translation elongation factor EFTs/EF1B dimerization; K02357 elongation factor Ts Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
translation elongation factor EFTs/EF1B dimerization
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_16
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists


comp(11059..11835)
DNA (777bp) protein (259aa)
30S ribosomal protein S2 n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003611E1D
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
30S ribosomal protein S2
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_17
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists


11900..12136
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00036A641C
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
50S ribosomal protein L31
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_18
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

12133..12861
DNA (729bp) protein (243aa)
peptide chain release factor 1 (bRF-1); K02835 peptide chain release factor 1 Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
prfA; peptide chain release factor 1; K02835 peptide chain release factor RF-1 id=133259 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
peptide chain release factor 1 (bRF-1)
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_19
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(13032..13502)
DNA (471bp) protein (157aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_20
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(13814..14605)
DNA (792bp) protein (264aa)
dehydrogenase (EC:1.1.1.100) Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
dehydrogenase (EC:1.1.1.100)
Uncharacterized protein n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4APZ1_FLELS
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_21
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(14611..15930)
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035E26E1
peptidase M23B Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
peptidoglycan DL-endopeptidase
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_23990_22
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(15945..16154)
DNA (210bp) protein (70aa)
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
Displaying 22 items

View Taxonomy