ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_32645_3

Organism: Candidatus Niyogibacteria bacterium RIFCSPHIGHO2_01_FULL_45_28

partial RP 38 / 55 BSCG 38 / 51 ASCG 9 / 38
Location: 1691..2263

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigW Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 190.0
  • Bit_score: 371
  • Evalue 9.60e-100
RNA polymerase, sigma-24 subunit, ECF subfamily protein id=3736405 bin=GWC2_OD1_43_27 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete) similarity UNIREF
DB: UNIREF100
  • Identity: 50.3
  • Coverage: 191.0
  • Bit_score: 190
  • Evalue 1.30e-45
RNA polymerase sigma factor SigW similarity KEGG
DB: KEGG
  • Identity: 30.1
  • Coverage: 176.0
  • Bit_score: 91
  • Evalue 2.90e-16

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_OD1_45_48 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 573
ATGAACATTGACGAAGATTTCGGCAGCTTAAAAGACGAAGAAGTTCTTTTTGCTTCCCTTGAAAAACCCGCCCTTTTCAGGGTTTTGATGGCCAGATACGAAAAGGCGTTTTTGCGAAAGGCCAAAAGCGTGGTGTATCGTGAGGAAGACGCCGAAGACGTTGTTCAGGACGCGTTTACTAAAATTTACTTTAACGCCAACAAATTCAAGAAAAGGCCGGGCATACAGTTCAAAAGCTGGGCTTACAAAATTCTGGTAAATACGGCCATCAACAAATACCACCAGCTTAAAAAAAGACGCGGTGTTGAATTTTCGGACGCCCTCATGTATGAAGAGACCCTCGAAAGCAACGAAAATCTGGTCGCGGCTGCCGATGCCAAAATGATTGTGGCCGATGCCATATCCAAACTGCCGGCCGAATCGCAAAAACTTCTAACCTCGTATTACATTCAGGACAAATCGTACAGGGATATAGCCACGGAAGAAAAAATGACTACGGCGGCTTTAAAAATGAAACTTTTCAGAGCCAAAAGGCTTTTTAAAAAGATATTAAACGATAATTTATATAACTAG
PROTEIN sequence
Length: 191
MNIDEDFGSLKDEEVLFASLEKPALFRVLMARYEKAFLRKAKSVVYREEDAEDVVQDAFTKIYFNANKFKKRPGIQFKSWAYKILVNTAINKYHQLKKRRGVEFSDALMYEETLESNENLVAAADAKMIVADAISKLPAESQKLLTSYYIQDKSYRDIATEEKMTTAALKMKLFRAKRLFKKILNDNLYN*