ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_1
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

72..359
DNA (288bp) protein (96aa)
DNA polymerase subunit beta; K07075 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein; K07075 id=5047486 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA polymerase subunit beta
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_2
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

356..565
DNA (210bp) protein (70aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_3
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

911..2035
DNA (1125bp) protein (375aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_4
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

2086..2634
DNA (549bp) protein (183aa)
Conserved protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PTG9_METMA
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_5
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

2631..4376
DNA (1746bp) protein (582aa)
DNA polymerase X family (EC:2.7.7.7) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
DNA polymerase X family (EC:2.7.7.7)
PHP domain protein id=2965910 bin=GWA1_ZB2_49_26 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_6
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

4814..5542
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00036E9BCA
hypothetical protein; K06966 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
decarboxylase
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_7
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(5566..6516)
DNA (951bp) protein (317aa)
Mg2 transporter protein CorA family protein; K03284 magnesium transporter Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Mg2 transporter protein CorA family protein; K03284 metal ion transporter, MIT family id=97799 bin=ACD65 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=ACD65 organism_group=PER (Peregrinibacteria) organism_desc=PER
Mg2 transporter protein CorA family protein
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_8
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(6614..6931)
DNA (318bp) protein (106aa)
Thioredoxin n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XWV2_9BACT
thioredoxin; K03671 thioredoxin 1 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
thioredoxin
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_9
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

7026..8045
DNA (1020bp) protein (340aa)
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] id=5090942 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
D-alanyl-D-alanine carboxypeptidase Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
D-alanyl-D-alanine carboxypeptidase
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_10
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

8036..9049
DNA (1014bp) protein (338aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide transferase (EC:2.7.8.13) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Phospho-N-acetylmuramoyl-pentapeptide-transferase id=2980158 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_11
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

9046..10620
DNA (1575bp) protein (525aa)
d-aminoacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003640705
d-aminoacylase
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_12
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

10716..10970
DNA (255bp) protein (85aa)
id=3309917 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
id=3309917 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_13
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

11156..11338
DNA (183bp) protein (61aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_14
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

11455..12783
DNA (1329bp) protein (443aa)
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (EC:6.3.2.9); K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9); K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] id=15188762 bin=GWE1_Berkelbacteria_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (EC:6.3.2.9)
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_15
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

12833..13885
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FFZ0_9BACT
stage V sporulation protein E; K03588 cell division protein FtsW Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
stage V sporulation protein E
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_16
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

13905..15872
DNA (1968bp) protein (656aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2GAY8_9BACT
GDP-mannose 4,6 dehydratase ISS
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_17
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

15874..17472
DNA (1599bp) protein (533aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZYM6_9BACT
integral membrane protein MviN; K03980 virulence factor Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
integral membrane protein MviN
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_18
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

17518..17979
DNA (462bp) protein (154aa)
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein id=5801188 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_19
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(18054..18302)
DNA (249bp) protein (83aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_20
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

18395..19855
DNA (1461bp) protein (487aa)
lysyl-tRNA synthetase (class II) (EC:6.1.1.6) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
lysS; lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] id=15190518 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_21
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

19852..20451
DNA (600bp) protein (200aa)
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family n=1 Tax=uncultured bacterium RepID=K1YLQ6_9BACT
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_22
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

20480..21718
DNA (1239bp) protein (413aa)
serS; seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
tde:TDE2307 serS; seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] id=13986 bin=ACD18 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=ACD18 organism_group=OD1 (Parcubacteria) organism_desc= OD1
serS; seryl-tRNA synthetase (EC:6.1.1.11)
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_23
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

21715..22479
DNA (765bp) protein (255aa)
alpha/beta hydrolase family protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Possible alpha/beta hydrolase superfamily,slr1916 homolog id=2132658 bin=GWD2_CPR2_39_7 species=Ruminococcus flavefaciens genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_CPR2_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D1_39_7
alpha/beta hydrolase family protein
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_24
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

22481..23827
DNA (1347bp) protein (449aa)
MurF; UDP-N-acetylmuramyl pentapeptide synthase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase id=2132654 bin=GWD2_CPR2_39_7 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWD2_CPR2_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D1_39_7
MurF; UDP-N-acetylmuramyl pentapeptide synthase
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_25
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

23833..25020
DNA (1188bp) protein (396aa)
DdlA2; D-alanine-D-alanine ligase and related ATP-grasp enzyme; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
ddlA2; D-alanine-D-alanine ligase and related ATP-grasp enzyme; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] id=5825 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
DdlA2; D-alanine--D-alanine ligase
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_26
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

25013..25900
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=candidate division OD1 bacterium SCGC AAA011-J16 RepID=UPI000381D1B0
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_27
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

25897..26577
DNA (681bp) protein (227aa)
putative uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein id=2762 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
putative uridylate kinase
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_28
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(26650..28098)
DNA (1449bp) protein (483aa)
membrane protein n=1 Tax=Pseudomonas fluorescens RepID=UPI00037070FB
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_29
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(28095..29681)
DNA (1587bp) protein (529aa)
Glycosyl transferase family 39 n=1 Tax=uncultured bacterium RepID=K2EBP0_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_48_180_rifcsphigho2_01_scaffold_1855_30
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

29702..30034
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AHC7_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Displaying items 1-30 of 47 in total

View Taxonomy