ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_92928

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_92928_1
unknown

Not on your lists

3..134
DNA (132bp) protein (44aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_92928_2
unknown

Not on your lists

comp(304..516)
DNA (213bp) protein (71aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_92928_3
R_OD1_Uhrbacteria_47_25, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

567..779
DNA (213bp) protein (71aa)
hypothetical protein id=4501568 bin=GWA2_OP3_52_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Uhrbacteria_47_25_curated
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_92928_4
GWA1_OD1_44_29, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(784..2811)
DNA (2028bp) protein (676aa)
DNA ligase, NAD-dependent (EC:6.5.1.2)
Ligase protein {ECO:0000313|EMBL:KKT62386.1}; TaxID=1618646 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA1_44_29.;"
DNA ligase id=3594477 bin=GWA1_ZB2_49_26 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_92928_5
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(2802..3335)
DNA (534bp) protein (178aa)
hypothetical protein Tax=GWA2_OD1_47_10b
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_92928_6
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(3332..3901)
DNA (570bp) protein (190aa)
hypothetical protein Tax=GWA2_OD1_47_10b
Putative uncharacterized protein id=4731757 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_92928_7
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(3905..4606)
DNA (702bp) protein (234aa)
hypothetical protein Tax=GWA2_OD1_47_10b
id=2607672 bin=GWC1_OD1_38_17 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_92928_8
Parcubacteria bacterium GW2011_GWA1_47_9, Parcubacteria, Bacteria

Not on your lists

comp(4576..5184)
DNA (609bp) protein (203aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU86424.1}; TaxID=1618794 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_47_9.;"
Pilus assembly protein id=4474234 bin=GWC2_OP3-like_45_7 species=Thioalkalivibrio nitratireducens genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_92928_9
Parcubacteria bacterium GW2011_GWA1_47_9, Parcubacteria, Bacteria

Not on your lists

comp(5186..5980)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036F7777
Type 4 prepilin-like protein leader peptide-processing enzyme {ECO:0000313|EMBL:KKU86425.1}; TaxID=1618794 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_47_9.;"
peptidase A24A domain-containing protein
Displaying 9 items

View Taxonomy