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RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_1
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(1..1899)
DNA (1899bp) protein (633aa)
protein disaggregation chaperone n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B3349C
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
ATP-dependent chaperone ClpB
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_2
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(2205..3767)
DNA (1563bp) protein (521aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A id=2648831 bin=GWC1_OD1_38_17 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_3
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(3764..4060)
DNA (297bp) protein (99aa)
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
gatC1; aspartyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Brevibacillus borstelensis AK1 RepID=M8DE99_9BACL
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_4
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(4066..6135)
DNA (2070bp) protein (690aa)
DNA ligase; K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037EB511
ligA; DNA ligase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_5
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(6141..6614)
DNA (474bp) protein (158aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_6
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(6621..7214)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI00037A394B
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_7
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(7216..8052)
DNA (837bp) protein (279aa)
seg Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
seg id=5803073 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_8
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(8049..8678)
DNA (630bp) protein (210aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_9
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(8754..8867)
DNA (114bp) protein (38aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_10
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(8948..9799)
DNA (852bp) protein (284aa)
peptidase a24a, prepilin type iv peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Prepilin peptidase-1 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXW4_9BACT
peptidase a24a, prepilin type iv peptidase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_11
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(9843..10382)
DNA (540bp) protein (180aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
General secretion pathway protein G id=4731761 bin=GWC2_OD1_43_27 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_12
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(10528..11727)
DNA (1200bp) protein (400aa)
type II secretion system F domain-containing protein; K02653 type IV pilus assembly protein PilC Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Type II secretion system F domain; K02653 type IV pilus assembly protein PilC id=5803078 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
pilC; type 4 fimbrial assembly protein PilC
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_13
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(11733..12803)
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000373007F
pilT; twitching motility protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
pilT; twitching motility protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_14
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(12928..14643)
DNA (1716bp) protein (572aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003652C54
pilB1; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
pilB1; type IV-A pilus assembly ATPase PilB
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_15
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(14652..14927)
DNA (276bp) protein (92aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_16
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(14938..15519)
DNA (582bp) protein (194aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_17
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(15535..16161)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037DCEB2
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_18
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(16304..17416)
DNA (1113bp) protein (371aa)
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Putative type IV pilus assembly protein PilM id=1968435 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_19
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

17520..18338
DNA (819bp) protein (273aa)
Phosphoribosyltransferase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVJ4_RUBXD
phosphoribosyltransferase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
phosphoribosyltransferase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_16011_20
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(18398..18592)
DNA (195bp) protein (65aa)
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Tfp pilus assembly protein PilB; K02652 type IV pilus assembly protein PilB id=5803124 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type II secretion system protein E
Displaying 20 items

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