ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_1
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(2..1492)
DNA (1491bp) protein (497aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_2
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(1497..3761)
DNA (2265bp) protein (755aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_3
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

3940..4857
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2C923_9BACT
yfjQ; putative metal ion transporter YfjQ Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
yfjQ; putative metal ion transporter YfjQ
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_4
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

4848..7520
DNA (2673bp) protein (891aa)
MgtA; cation transport ATPase; K01537 Ca2+-transporting ATPase [EC:3.6.3.8] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1XEZ6_9BACT
MgtA; cation transport ATPase
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_5
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

7535..8917
DNA (1383bp) protein (461aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SEV4_9BACT
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_6
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

8917..9279
DNA (363bp) protein (121aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
hypothetical protein id=120343 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_7
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

9587..11008
DNA (1422bp) protein (474aa)
primary replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
nth:Nther_2910 primary replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.1.-] id=16563 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
primary replicative DNA helicase
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_8
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(11369..11641)
DNA (273bp) protein (91aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_9
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

11778..12386
DNA (609bp) protein (203aa)
DNA replication and repair protein RecR; K06187 recombination protein RecR Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
Recombination protein RecR id=1273300 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
DNA replication and repair protein RecR
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_10
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists


comp(12425..12733)
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=1 Tax=Selenomonas sp. CM52 RepID=J4WN41_9FIRM
ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
ribosomal protein L21
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_11
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(12772..13206)
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N4A9_9ARCH id=5087226 bin=GWF1_OP11_31_35_complete species=Candidatus Caldiarchaeum subterraneum genus=Candidatus Caldiarchaeum taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
protein of unknown function DUF192 Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_12
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(13226..14275)
DNA (1050bp) protein (350aa)
glycosyl transferase family protein; K13685 UDP-N-acetylglucosamine:undecaprenyl-P N-acetylglucosaminyl 1-P transferase [EC:2.7.8.-] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YT05_9BACT
glycosyl transferase family protein
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_13
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(14277..15902)
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FYB7_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
membrane protein
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_14
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(15922..16299)
DNA (378bp) protein (126aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_15
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(16365..16907)
DNA (543bp) protein (181aa)
hypothetical protein; K05873 adenylate cyclase, class 2 [EC:4.6.1.1] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:245 RepID=R6B4M0_9CLOT
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_16
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(16907..17590)
DNA (684bp) protein (228aa)
uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
hypothetical protein id=2762 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
uridylate kinase
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_17
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(17597..18535)
DNA (939bp) protein (313aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_18
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(18532..19176)
DNA (645bp) protein (215aa)
Peptidase M15D vanX D-ala-D-ala dipeptidase n=1 Tax=Streptomyces auratus AGR0001 RepID=J1ZTD4_9ACTO
vanX; D-alanyl-D-alanine dipeptidase Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
dipeptidase
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_19
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(19215..20240)
DNA (1026bp) protein (342aa)
D-alanine--D-alanine ligase (EC:6.3.2.4) Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
D-alanyl-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] id=3300 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
D-alanine--D-alanine ligase (EC:6.3.2.4)
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_5278_20
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(20240..20593)
DNA (354bp) protein (118aa)
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
alanine racemase n=1 Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B567B5
alr; Alanine racemase
Displaying 20 items

View Taxonomy