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RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326

Search features with annotation key words

Displaying items 1-30 of 135 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_1
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

3..230
DNA (228bp) protein (76aa)
histone acetyltransferase, ELP3 family (EC:2.3.1.48); K07739 elongator complex protein 3 [EC:2.3.1.48] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
histone acetyltransferase (EC:2.3.1.48)
hypothetical protein n=1 Tax=Microgenomates bacterium SCGC AAA040-P11 RepID=UPI0003805290
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_2
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(227..1606)
DNA (1380bp) protein (460aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9); K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] id=16626 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
UDP-N-acetylmuramoylalanine--D-glutamate ligase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_3
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(1603..2766)
DNA (1164bp) protein (388aa)
thiamine biosynthesis/tRNA modification protein ThiI; K03151 thiamine biosynthesis protein ThiI Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Probable tRNA sulfurtransferase id=2648838 bin=GWC1_OD1_38_17 species=Collinsella aerofaciens genus=Collinsella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
thiamine biosynthesis/tRNA modification protein ThiI
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_4
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(2759..3502)
DNA (744bp) protein (248aa)
Hypothetical potassium channel protein n=1 Tax=Vibrio furnissii (strain DSM 14383 / NCTC 11218) RepID=F0LT84_VIBFN
potassium channel protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
potassium channel protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_5
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(3507..4262)
DNA (756bp) protein (252aa)
Peptidyl-prolyl cis-trans isomerase cyclophilin type n=1 Tax=Pseudanabaena biceps PCC 7429 RepID=L8N4K7_9CYAN
peptidyl-prolyl cis-trans isomerase Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
peptidyl-prolyl cis-trans isomerase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_6
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(4222..4761)
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N4A9_9ARCH
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_7
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(4748..6091)
DNA (1344bp) protein (448aa)
UDP-N-acetylmuramyl tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase id=2604228 bin=GWC1_CPR2_39_9 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
UDP-N-acetylmuramyl tripeptide synthetase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_8
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(6216..7253)
DNA (1038bp) protein (346aa)
femX; aminoacyltransferase FemX (EC:2.3.2.-) Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
femX; aminoacyltransferase FemX (EC:2.3.2.-)
Aminoacyltransferase FemX id=2934167 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_9
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(7350..7925)
DNA (576bp) protein (192aa)
Holliday junction DNA helicase subunit RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Holliday junction ATP-dependent DNA helicase RuvA id=2934171 bin=GWC1_OD1_38_17 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Holliday junction DNA helicase subunit RuvA
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_10
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(7993..9594)
DNA (1602bp) protein (534aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI000379AE78
ATPase AAA Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
putative helicase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_11
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

10034..12136
DNA (2103bp) protein (701aa)
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
UvrABC system protein B id=2934178 bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
excinuclease ABC subunit B
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_12
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(12247..12495)
DNA (249bp) protein (83aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_13
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(12657..14264)
DNA (1608bp) protein (536aa)
pyrG; putative CTP synthase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
pyrG; putative CTP synthase (EC:6.3.4.2)
CTP synthase id=3012538 bin=GWC1_OD1_38_17 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_14
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

14462..16099
DNA (1638bp) protein (546aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A867_9BACT
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_15
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists


16175..16447
DNA (273bp) protein (91aa)
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
30S ribosomal protein S20 id=2934184 bin=GWC1_OD1_38_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
rpsT; 30S ribosomal protein S20
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_16
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(16453..17409)
DNA (957bp) protein (319aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
DNA polymerase III, delta subunit id=2934187 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
DNA polymerase III subunit delta
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_17
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(17412..18503)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037863A9
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_18
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(18529..19374)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI000375F4C7
integral membrane sensor hybrid histidine kinase Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_19
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(19384..20538)
DNA (1155bp) protein (385aa)
Amino acid permeases Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Aromatic amino acid permease id=2934049 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Amino acid permeases
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_20
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(20542..20964)
DNA (423bp) protein (141aa)
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
MgtC family magnesium (Mg2+) transporter id=2934053 bin=GWC1_OD1_38_17 species=unknown genus=Prevotella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
MgtC/SapB transporter
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_21
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(20985..21590)
DNA (606bp) protein (202aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Putative uncharacterized protein id=4731754 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_22
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(21614..22981)
DNA (1368bp) protein (456aa)
RNA-metabolising metallo-beta-lactamase; K07576 metallo-beta-lactamase family protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Putative exonuclease of the beta-lactamase fold involved in RNA processing id=2648841 bin=GWC1_OD1_38_17 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RNA-metabolising metallo-beta-lactamase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_23
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(23057..24337)
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037E82AE
processing protease Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
processing protease
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_24
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(24490..25065)
DNA (576bp) protein (192aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_25
unknown

Not on your lists

25205..25369
DNA (165bp) protein (55aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_26
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

25366..25464
DNA (99bp) protein (33aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_27
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(25424..25693)
DNA (270bp) protein (90aa)
Transcriptional regulator, AbrB family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YD7_SOLUE
AbrB family transcriptional regulator Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
AbrB family transcriptional regulator
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_28
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists


comp(25764..27059)
DNA (1296bp) protein (432aa)
glyS; glycyl-tRNA synthetase (EC:6.1.1.14); K01880 glycyl-tRNA synthetase [EC:6.1.1.14] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
ate:Athe_1410 glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14] id=43473 bin=ACD38 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_29
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(27073..28953)
DNA (1881bp) protein (627aa)
id=2824162 Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
id=2824162 bin=GWC1_OD1_38_17 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_326_30
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(28957..29547)
DNA (591bp) protein (197aa)
DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
recO; recombination protein RecO; K03584 DNA repair protein RecO (recombination protein O) id=96052 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
DNA repair protein RecO
Displaying items 1-30 of 135 in total

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