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RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_1
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(3..191)
DNA (189bp) protein (63aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_2
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(193..1236)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI0003737840
aminodeoxychorismate lyase; K07082 UPF0755 protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
aminodeoxychorismate lyase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_3
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(1596..2351)
DNA (756bp) protein (252aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Putative uncharacterized protein id=3012698 bin=GWC1_OD1_38_17 species=uncultured marine bacterium 580 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_4
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(2363..2785)
DNA (423bp) protein (141aa)
transmembrane_regions 15..34 Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
transmembrane_regions 15..34 id=133577 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_5
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(2848..3066)
DNA (219bp) protein (73aa)
UPF0235 protein CY0110_24581 n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IMP2_9CHRO id=5570 bin=ACD12 species=Cyanothece sp. CCY0110 genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_6
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(3069..3389)
DNA (321bp) protein (107aa)
nucleotide-binding protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Methionine--tRNA ligase id=1955931 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
nucleotide-binding protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_7
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(3395..4219)
DNA (825bp) protein (275aa)
HhH-GPD family protein; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
HhH-GPD family protein n=1 Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CW98_METMJ
HhH-GPD family protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_8
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(4231..4422)
DNA (192bp) protein (64aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_9
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(4432..5013)
DNA (582bp) protein (194aa)
guanosine polyphosphate pyrophosphohydrolase n=1 Tax=Corynebacterium diphtheriae RepID=UPI00030C1944
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_10
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(5108..6694)
DNA (1587bp) protein (529aa)
cytochrome C family protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Repeat-containing protein id=2789471 bin=GWA2_Elusimicrobia_56_46 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
cytochrome C family protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_11
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(6771..8210)
DNA (1440bp) protein (480aa)
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI000377AE9B
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_12
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

8581..9054
DNA (474bp) protein (158aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_13
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(9317..10555)
DNA (1239bp) protein (413aa)
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein; K02004 putative ABC transport system permease protein id=5802299 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
MacB-like periplasmic core domain containing protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_14
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(10559..11272)
DNA (714bp) protein (238aa)
ABC transporter; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Macrolide export ATP-binding/permease protein MacB id=3736880 bin=GWC2_OD1_43_27 species=PER_GWA2_38_35 genus=PER_GWA2_38_35 taxon_order=PER_GWA2_38_35 taxon_class=PER_GWA2_38_35 phylum=PER tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
ABC transporter
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_15
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(11275..12942)
DNA (1668bp) protein (556aa)
secretion protein hlyd; K02005 HlyD family secretion protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
efflux transporter, RND family, MFP subunit id=15190406 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
secretion protein hlyd
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_16
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(13056..14219)
DNA (1164bp) protein (388aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_30427_17
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

14436..15035
DNA (600bp) protein (200aa)
Putative cytoplasmic protein n=1 Tax=Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) RepID=E6VQR6_DESAO
putative cytoplasmic protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
putative cytoplasmic protein
Displaying 17 items

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