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RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_1
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(353..2071)
DNA (1719bp) protein (573aa)
putative ABC transporter substrate binding protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Extracellular solute-binding protein id=3544614 bin=GWC1_OD1_38_17 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
putative ABC transporter substrate binding protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_2
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(2372..2587)
DNA (216bp) protein (72aa)
transmembrane_regions 48..70 Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
transmembrane_regions 48..70 id=16840 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_3
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(2701..3042)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1XGB0_9BACT
membrane spanning protein; K08972 putative membrane protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
membrane spanning protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_4
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(3188..4450)
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00036B9CB9
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Excinuclease ABC subunit C
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_5
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

4466..5794
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EYX7_9BACT
putative ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
ABC transporter
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_6
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

5887..7086
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F8D6_9BACT
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_7
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

7211..8644
DNA (1434bp) protein (478aa)
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Preprotein translocase subunit SecD id=3152090 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
secD; preprotein translocase subunit SecD
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_8
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

8632..9555
DNA (924bp) protein (308aa)
protein-export membrane protein SecF; K03074 preprotein translocase subunit SecF Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein id=3152093 bin=GWC1_OD1_38_17 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
protein-export membrane protein SecF
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_9
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(9563..11848)
DNA (2286bp) protein (762aa)
recG; ATP-dependent DNA helicase; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
recG; ATP-dependent DNA helicase (EC:3.6.4.12)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037D9006
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_10
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

11870..12379
DNA (510bp) protein (170aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_11
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

12466..12774
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMT4_9BACT
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_12
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

12731..12949
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Geminocystis herdmanii RepID=UPI00034CB634
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_13
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

12974..14530
DNA (1557bp) protein (519aa)
collagen triple helix repeat domain protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
collagen triple helix repeat domain protein id=15189790 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_14
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(14910..15434)
DNA (525bp) protein (175aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_15
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

15677..16819
DNA (1143bp) protein (381aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein id=3152209 bin=GWC1_OD1_38_17 species=ACD5 genus=ACD5 taxon_order=ACD5 taxon_class=ACD5 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
exonuclease
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_16
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(16832..17587)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Legionella shakespearei RepID=UPI00035E7F34
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Endonuclease; Exonuclease
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_17
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(17593..19131)
DNA (1539bp) protein (513aa)
ctpA; carboxy-terminal-processing protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
ctpA; C-terminal-processing protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] id=3152197 bin=GWC1_OD1_38_17 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
carboxyl-terminal protease
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_18
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(19257..19718)
DNA (462bp) protein (154aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_19
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists


19834..20112
DNA (279bp) protein (93aa)
rpmA; 50S ribosomal protein L27 Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 id=3152202 bin=GWC1_OD1_38_17 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
rpmA; 50S ribosomal protein L27
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_20
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists


comp(20134..20577)
DNA (444bp) protein (148aa)
50S ribosomal protein L9 n=2 Tax=Caldanaerobacter subterraneus RepID=RL9_THETN
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
rplI; 50S ribosomal protein L9
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_21
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(20586..21791)
DNA (1206bp) protein (402aa)
carboxyl-terminal protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
ctpA; C-terminal-processing protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] id=3152197 bin=GWC1_OD1_38_17 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
carboxyl-terminal protease (EC:3.4.21.102)
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_22
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(21784..22602)
DNA (819bp) protein (273aa)
family 2 glycosyl transferase; K07011 Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
glycosyltransferase; K07011 id=129862 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
family 2 glycosyl transferase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_23
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(22614..23618)
DNA (1005bp) protein (335aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Cell envelope-related transcriptional attenuator id=3152195 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_24
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(23639..24664)
DNA (1026bp) protein (342aa)
glycosyltransferase Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Glycosyl transferase family protein id=2648843 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
glycosyltransferase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_25
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(24609..26189)
DNA (1581bp) protein (527aa)
O-antigen polymerase Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
id=2648844 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
O-antigen polymerase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_26
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(26186..27355)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035FD02A
group 1 glycosyl transferase Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
group 1 glycosyl transferase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_27
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(27352..28269)
DNA (918bp) protein (306aa)
putative glycosyltransferase; K07011 Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Putative glycosyltransferase (Family 2) id=2823727 bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
putative glycosyltransferase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_28
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(28257..28955)
DNA (699bp) protein (233aa)
WecB/TagA/CpsF family glycosyl transferase (EC:2.4.1.187); K05946 N-acetylglucosaminyldiphosphoundecaprenol [EC:2.4.1.187] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
WecB/TagA/CpsF family glycosyl transferase (EC:2.4.1.187)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037239F6
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4865_29
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

28983..29807
DNA (825bp) protein (275aa)
priA; primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Primosomal protein N, (Replication factor Y) (Superfamily II helicase) id=3013001 bin=GWC1_OD1_38_17 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
priA; primosomal protein N'
Displaying 29 items

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