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RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_1
R_OD1_46_25, Parcubacteria, Bacteria

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3..206
DNA (204bp) protein (68aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_2
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

209..712
DNA (504bp) protein (168aa)
hydD; hydrogenase/sulfur reductase subunit delta Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hydD; hydrogenase/sulfur reductase subunit delta id=14424147 bin=bin11_novelCP species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=bin11_novelCP organism_group=Unknown_CP
NADH ubiquinone oxidoreductase 20 kDa subunit
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_3
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

785..2077
DNA (1293bp) protein (431aa)
nickel-dependent hydrogenase large subunit Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
nickel-dependent hydrogenase large subunit id=14424148 bin=bin11_novelCP species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=bin11_novelCP organism_group=Unknown_CP
hydrogenase/sulfur reductase, alpha subunit
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_4
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(2052..2429)
DNA (378bp) protein (126aa)
hypothetical protein
alias=GW2011A_18_10 Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
alias=GW2011A_18_10 id=14424149 bin=bin11_novelCP species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=bin11_novelCP organism_group=Unknown_CP
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_5
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(2426..3187)
DNA (762bp) protein (254aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein id=14424150 bin=bin11_novelCP species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=bin11_novelCP organism_group=Unknown_CP
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_6
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(3153..4106)
DNA (954bp) protein (318aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Putative uncharacterized protein id=4074680 bin=GWC2_Chloroflexi_73_18 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_7
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(4116..5720)
DNA (1605bp) protein (535aa)
PKD Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
PKD id=3079089 bin=GWC1_OD1_38_17 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_8
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

5762..7105
DNA (1344bp) protein (448aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000381C791
hypothetical protein; K03646 colicin import membrane protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Blue (Type 1) copper protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_9
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(7115..8131)
DNA (1017bp) protein (339aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein id=3401905 bin=GWC1_OD1_38_17 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_10
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(8124..8660)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI00036FA102
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RNA polymerase sigma70
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_11
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(8725..9090)
DNA (366bp) protein (122aa)
Fe-S cluster protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B646CA
NifU family SUF system FeS assembly protein; K04488 nitrogen fixation protein NifU and related proteins Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
NifU family SUF system FeS assembly protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_12
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(9119..10339)
DNA (1221bp) protein (407aa)
SufS subfamily cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
csd1; cysteine desulfurase Csd (EC:2.8.1.7)
Cysteine desulfurase n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SM49_9CHLR
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_13
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(10336..10914)
DNA (579bp) protein (193aa)
sufD; FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
sufD; FeS assembly protein SufD
Putative uncharacterized protein sufD id=4845871 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_14
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(10971..12368)
DNA (1398bp) protein (466aa)
FeS assembly protein SufB n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKT5_SINAD
FeS assembly protein SufB Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
FeS assembly protein SufB
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_15
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(12358..13080)
DNA (723bp) protein (241aa)
FeS assembly ATPase SufC n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZM9_RUBXD
FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
FeS assembly ATPase SufC
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_16
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(13085..13486)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000378C812
transcriptional regulator Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
transcriptional regulator
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_17
unknown

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comp(13490..13624)
DNA (135bp) protein (45aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_18
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(13694..15694)
DNA (2001bp) protein (667aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000373872C
copper-translocating P-type ATPase Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_19
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(15777..16385)
DNA (609bp) protein (203aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Putative uncharacterized protein id=3594573 bin=GWA1_ZB2_49_26 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_20
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

16926..18080
DNA (1155bp) protein (385aa)
trmU; tRNA methyl transferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
trmU; tRNA methyl transferase (EC:2.1.1.61)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00036F8AFA
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_21
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists


18517..20529
DNA (2013bp) protein (671aa)
alaS; alanine--tRNA ligase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
alaS; alanine--tRNA ligase (EC:6.1.1.7)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI0003805103
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_22
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

20558..20776
DNA (219bp) protein (73aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Putative uncharacterized protein id=4731961 bin=GWC2_OD1_43_27 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
putative protein family UPF0150
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_23
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

20989..22221
DNA (1233bp) protein (411aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_4117_24
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

22218..23531
DNA (1314bp) protein (438aa)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT03_9BACT id=3007 bin=ACD11 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
Putative uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Displaying 24 items

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