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RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308

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Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_1
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(1..333)
DNA (333bp) protein (111aa)
putative S-layer protein Tax=RBG_16_RIF_OP11_02_41_13_curated
seg 7..16 id=85386 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_2
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(330..1547)
DNA (1218bp) protein (406aa)
type II secretion system protein; K02653 type IV pilus assembly protein PilC Tax=RBG_16_RIF_OP11_02_41_13_curated
type II secretion system f domain protein; K02653 type IV pilus assembly protein PilC id=85388 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
Type II secretion system F domain-containing protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_3
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(1549..3228)
DNA (1680bp) protein (560aa)
type II secretion system protein E (GspE); K02652 type IV pilus assembly protein PilB Tax=RBG_16_RIF_OP11_02_41_13_curated
Type II secretion system protein E id=3787215 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
type II secretion system protein E (GspE)
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_4
R_RIF_OP11_02_39_21, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(3297..3521)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F614_9BACT
hypothetical protein; K09779 hypothetical protein Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_02_39_21_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_5
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

3599..3907
DNA (309bp) protein (103aa)
Tax=RBG_16_RIF_OP11_02_41_13_curated
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_6
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(4078..4431)
DNA (354bp) protein (118aa)
RNA-binding proteins (RRM domain) Tax=RBG_16_RIF_OP11_02_41_13_curated
similar to cp31AHv protein id=51772 bin=ACD40 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=ACD40 organism_group=OP11 (Microgenomates) organism_desc=OP11
RNA-binding proteins (RRM domain)
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_7
R_OP11_Roizmanbacteria_37_12, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(4572..4847)
DNA (276bp) protein (92aa)
glyoxalase/bleomycin resistance protein/dioxygenase; K06996 Tax=RIFCSPLOWO2_01_FULL_OP11_Roizmanbacteria_37_12_curated
Glyoxalase/bleomycin resistance protein/dioxygenase id=2159259 bin=GWB2_Ignavibacteria_35_12 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
glyoxalase/bleomycin resistance protein/dioxygenase
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_8
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(5179..5346)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Leptospira vanthielii serovar Holland str. Waz Holland = ATCC 700522 RepID=N1W2J8_9LEPT
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_9
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

5405..6139
DNA (735bp) protein (245aa)
seg 51..63 Tax=RBG_16_RIF_OP11_02_41_13_curated
seg 51..63 id=75646 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_10
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

6126..7781
DNA (1656bp) protein (552aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A4F5_9BACT
glycosyl transferase family protein Tax=RBG_16_RIF_OP11_02_41_13_curated
glycosyl transferase family protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_11
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(8028..8342)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI000361D597
histone acetyltransferase Tax=RBG_16_RIF_OP11_02_41_13_curated
histone acetyltransferase
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_12
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

8437..9306
DNA (870bp) protein (290aa)
seg 174..185 Tax=RBG_16_RIF_OP11_02_41_13_curated
seg 174..185 id=35998 bin=ACD30 species=ACD30 genus=ACD30 taxon_order=ACD30 taxon_class=ACD30 phylum=OP11 tax=ACD30 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_13
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(9392..9967)
DNA (576bp) protein (192aa)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
Putative uncharacterized protein id=1713199 bin=GWB2_Chloroflexi_49_20 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
hypothetical protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_14
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(10087..10536)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B4E61A
Transposase for insertion sequence element IS904 Tax=RBG_16_RIF_OP11_02_41_13_curated
Transposase for insertion sequence element IS904
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_15
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(10709..11227)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HKM9_PYRSN
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_16
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(11205..12503)
DNA (1299bp) protein (433aa)
Lmo0768 protein n=45 Tax=Listeria RepID=Q8Y8X4_LISMO id=5086801 bin=GWF1_OP11_31_35_complete species=unknown genus=Listeria taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
family 1 extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein Tax=RBG_16_RIF_OP11_02_41_13_curated
family 1 extracellular solute-binding protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_17
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

12514..14262
DNA (1749bp) protein (583aa)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
VanW family protein id=75621 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
VanW family protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_18
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

14409..14678
DNA (270bp) protein (90aa)
Uncharacterized protein Tax=RBG_16_RIF_OP11_02_41_13_curated
Uncharacterized protein id=3202998 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_19
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

14644..15042
DNA (399bp) protein (133aa)
Ribonuclease VapC n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQM4_9GAMM
PIN domain protein; K07062 Tax=RBG_16_RIF_OP11_02_41_13_curated
PIN domain protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_20
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

15118..15732
DNA (615bp) protein (205aa)
Tax=RBG_16_RIF_OP11_02_41_13_curated
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_21
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

15913..16083
DNA (171bp) protein (57aa)
VanW family protein n=1 Tax=uncultured bacterium RepID=K1ZED0_9BACT
VanW family protein Tax=RBG_16_RIF_OP11_02_41_13_curated
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_22
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(16151..17350)
DNA (1200bp) protein (400aa)
Peptidase, M20/M25/M40 superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff RepID=L8GKX9_ACACA
peptidase, M20/M25/M40 superfamily protein Tax=RBG_16_RIF_OP11_02_41_13_curated
putative peptidic bond hydrolase
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_23
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

17380..18450
DNA (1071bp) protein (357aa)
Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G633_ABIDE id=75044 bin=ACD52 species=Abiotrophia defectiva genus=Abiotrophia taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=RBG_16_RIF_OP11_02_41_13_curated
Sua5/YciO/YrdC/YwlC family protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_24

Not on your lists


18447..19511
DNA (1065bp) protein (355aa)
gcp; putative DNA-binding/iron metalloprotein/AP endonuclease; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] id=75043 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-th
DNA-binding/iron metalloprotein/AP endonuclease
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_25
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists


19616..21874
DNA (2259bp) protein (753aa)
tye:THEYE_A0884 valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=75042 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=RBG_16_RIF_OP11_02_41_13_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_26
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(21871..22173)
DNA (303bp) protein (101aa)
transmembrane_regions 74..96 Tax=RBG_16_RIF_OP11_02_41_13_curated
transmembrane_regions 74..96 id=75198 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_27
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(22175..22990)
DNA (816bp) protein (272aa)
coiled-coil 3..24 Tax=RBG_16_RIF_OP11_02_41_13_curated
coiled-coil 3..24 id=75035 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_28
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists


comp(23054..23758)
DNA (705bp) protein (235aa)
50S ribosomal protein L25/general stress protein Ctc; K02897 large subunit ribosomal protein L25 id=75041 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 Tax=RBG_16_RIF_OP11_02_41_13_curated
50S ribosomal protein L25
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_29
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(23762..26191)
DNA (2430bp) protein (810aa)
transmembrane_regions 46..68 id=75036 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_3308_30
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(26289..26720)
DNA (432bp) protein (144aa)
rnhA; ribonuclease HI (EC:3.1.26.4); K03469 ribonuclease HI [EC:3.1.26.4] id=75040 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
rnhA; ribonuclease HI (EC:3.1.26.4); K03469 ribonuclease HI [EC:3.1.26.4] Tax=RBG_16_RIF_OP11_02_41_13_curated
rnhA; ribonuclease HI (EC:3.1.26.4)
Displaying items 1-30 of 89 in total

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