ggKbase home page

RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_1
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

1..258
DNA (258bp) protein (86aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] Tax=RBG_16_RIF_OP11_02_41_13_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2ET25_9BACT
recJ; single-stranded-DNA-specific exonuclease
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_2
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(500..1555)
DNA (1056bp) protein (352aa)
Tax=RBG_16_RIF_OP11_02_41_13_curated
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_3
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(1559..2368)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI000368A080
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_4
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(2372..3370)
DNA (999bp) protein (333aa)
peptidase U61 LD-carboxypeptidase A; K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] Tax=RBG_16_RIF_OP11_02_41_13_curated
Putative MccF-like protein (Microcin C7 resistance) id=2739747 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
peptidase U61 LD-carboxypeptidase A
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_5
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(3377..4180)
DNA (804bp) protein (268aa)
Uncharacterized protein n=2 Tax=Bacillus cereus RepID=J8JFQ0_BACCE
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_6
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(4192..4572)
DNA (381bp) protein (127aa)
S-adenosylmethionine decarboxylase-related protein; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] Tax=RBG_16_RIF_OP11_02_41_13_curated
S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0ADA9_NITEC
S-adenosylmethionine decarboxylase-related protein
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_7
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(4578..5600)
DNA (1023bp) protein (341aa)
asparagine--tRNA ligase; K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22] Tax=RBG_16_RIF_OP11_02_41_13_curated
asparagine--tRNA ligase (EC:6.1.1.22)
Uncharacterized protein n=1 Tax=Bacillus cereus VD196 RepID=R8G9X0_BACCE
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_8
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

6082..6579
DNA (498bp) protein (166aa)
(p)ppGpp synthetase I, SpoT/RelA (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] Tax=RBG_16_RIF_OP11_02_41_13_curated
(p)ppGpp synthetase I, SpoT/RelA (EC:2.7.6.5)
GTP pyrophosphokinase n=1 Tax=Streptomycetaceae bacterium MP113-05 RepID=V6L796_9ACTO
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_9
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

6563..6805
DNA (243bp) protein (81aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] Tax=RBG_16_RIF_OP11_02_41_13_curated
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
(P)ppGpp synthetase I, SpoT/RelA n=1 Tax=Desulfohalobium retbaense (strain DSM 5692) RepID=C8X179_DESRD
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_10
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

6905..7900
DNA (996bp) protein (332aa)
seg 104..109 Tax=RBG_16_RIF_OP11_02_41_13_curated
seg 104..109 id=75229 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_11
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

7961..8179
DNA (219bp) protein (73aa)
hypothetical protein id=75228 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_12

Not on your lists


8408..10210
DNA (1803bp) protein (601aa)
cpf:CPF_0770 aspC; aspartyl-tRNA synthetase (EC:6.1.1.12); K09759 nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] id=75232 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
Uncharacterized protein {ECO:0000313|EMBL:EKD62180.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
aspS-A; aspartyl-tRNA synthetase
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_13

Not on your lists

10325..11230
DNA (906bp) protein (302aa)
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 id=75231 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 {ECO:0000313|EMBL:EKD62179.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_14
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(11218..12264)
DNA (1047bp) protein (349aa)
transmembrane_regions 29..51 id=75230 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
transmembrane_regions 29..51 Tax=RBG_16_RIF_OP11_02_41_13_curated
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_15
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

12303..13589
DNA (1287bp) protein (429aa)
glnS; glutamyl-tRNA synthetase (EC:6.1.1.17); K09698 nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] Tax=RBG_16_RIF_OP11_02_41_13_curated
dtu:Dtur_1273 gltX; glutamyl-tRNA synthetase; K09698 nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] id=75233 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
glnS; glutamyl-tRNA synthetase (EC:6.1.1.17)
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_16
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

13595..14545
DNA (951bp) protein (317aa)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
hypothetical protein id=85786 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_17
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

14605..14961
DNA (357bp) protein (119aa)
hypothetical protein id=75781 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
RIFCSPHIGHO2_01_FULL_OP11_42_80_rifcsphigho2_01_scaffold_17759_18
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

14986..15342
DNA (357bp) protein (119aa)
Two component transcriptional regulator, winged helix family n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSR3_9BACT id=75769 bin=ACD52 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
ykoG; two-component response regulator [YkoH] Tax=RBG_16_RIF_OP11_02_41_13_curated
OmpR family response regulator
Displaying 18 items

View Taxonomy