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RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_1
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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comp(3..80)
DNA (78bp) protein (26aa)
30S ribosomal protein S10 id=5227354 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_2
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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comp(235..657)
DNA (423bp) protein (141aa)
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
rpsJ; 30S ribosomal protein S10
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_3

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comp(1911..3116)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7Q0R6_9BACT
Elongation factor Tu {ECO:0000313|EMBL:KKR32238.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
tuf; Elongation factor Tu 2
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_4
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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comp(3296..3595)
DNA (300bp) protein (100aa)
id=5227385 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
id=5227385 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_5

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comp(3605..6163)
DNA (2559bp) protein (853aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR32240.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_6

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comp(6276..8417)
DNA (2142bp) protein (714aa)
Elongation factor G {ECO:0000313|EMBL:KKR32241.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
fusA-3; elongation factor G; K02355 elongation factor G id=5802997 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
fusA; elongation factor G
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_7

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comp(8708..9196)
DNA (489bp) protein (163aa)
30S ribosomal protein S7 {ECO:0000313|EMBL:KKR32242.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
30S ribosomal protein S7 id=5227520 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
30S ribosomal protein S7
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_8
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists


comp(9290..9703)
DNA (414bp) protein (138aa)
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 id=5803002 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
30S ribosomal protein S12
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_9
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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comp(10011..10625)
DNA (615bp) protein (205aa)
peptidase M50 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
peptidase M50 id=5803003 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
peptidase M50
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_10

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10801..11043
DNA (243bp) protein (81aa)
Uridine kinase n=1 Tax=sediment metagenome RepID=D9PMW0_9ZZZZ
Uridine kinase {ECO:0000313|EMBL:KKR32245.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
50S ribosomal protein L28p
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_11

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comp(11127..12038)
DNA (912bp) protein (304aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR32246.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
DNA internalization-like competence protein ComEC/Rec2; K02238 competence protein ComEC id=5803006 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
comEC; competence protein ComEC
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_12
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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12087..12689
DNA (603bp) protein (201aa)
manganese/iron superoxide dismutase-like protein; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
Superoxide dismutase, iron/manganese-containing n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZU5_9BACT
manganese/iron superoxide dismutase-like protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_13
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

12698..13000
DNA (303bp) protein (101aa)
NUDIX hydrolase n=1 Tax=candidate division WWE3 bacterium RAAC2_WWE3_1 RepID=V5RTX3_9BACT
RNA pyrophosphohydrolase Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
NUDIX hydrolase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_14
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(13134..14636)
DNA (1503bp) protein (501aa)
DNA internalization-related competence protein ComEC/Rec2; K02238 competence protein ComEC Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
DNA internalization-related competence protein ComEC/Rec2; K02238 competence protein ComEC id=5803109 bin=OD1_GWC2_34_28 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA internalization-related competence protein ComEC/Rec2
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_15
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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comp(14684..15364)
DNA (681bp) protein (227aa)
Ribonuclease H n=1 Tax=Bdellovibrio exovorus JSS RepID=M4VAE4_9DELT
ribonuclease H Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
ribonuclease H
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_16

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comp(15488..17311)
DNA (1824bp) protein (608aa)
Single-stranded-DNA-specific exonuclease n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PX71_9BACT
Exonuclease RecJ {ECO:0000313|EMBL:KKR46177.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
single-stranded-DNA-specific exonuclease RecJ
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_17
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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17374..17778
DNA (405bp) protein (135aa)
Histidine triad (HIT) protein n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8ABH4_IGNH4
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
histidine triad (HIT) protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_18
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(17806..18090)
DNA (285bp) protein (95aa)
Transcriptional regulator, AbrB family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YD7_SOLUE
AbrB family transcriptional regulator Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
AbrB family transcriptional regulator
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_19
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(18190..19356)
DNA (1167bp) protein (389aa)
bifunctional phosphoglycerate kinase/triosephosphate isomerase; K15330 phosphoglycerate kinase / triosephosphate isomerase [EC:2.7.2.3 5.3.1.1] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] id=5803116 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
bifunctional phosphoglycerate kinase/triosephosphate isomerase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_20
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(19353..20111)
DNA (759bp) protein (253aa)
bifunctional phosphoglycerate kinase/triosephosphate isomerase; K15330 phosphoglycerate kinase / triosephosphate isomerase [EC:2.7.2.3 5.3.1.1] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] id=5803118 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
phosphate starvation-inducible protein PsiE (EC:2.7.2.3 5.3.1.1)
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_21

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comp(20133..21431)
DNA (1299bp) protein (433aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR31215.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
id=3486137 bin=GWA1_ZB2_49_26 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_22

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comp(21463..21972)
DNA (510bp) protein (170aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR31214.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_23
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(21975..22463)
DNA (489bp) protein (163aa)
seg Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
seg id=5803121 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_24

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comp(22490..22954)
DNA (465bp) protein (155aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR46169.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
seg id=5803122 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_25
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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comp(22951..24165)
DNA (1215bp) protein (405aa)
type IV pilin; K02653 type IV pilus assembly protein PilC Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC id=5803123 bin=OD1_GWC2_34_28 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type IV pilin
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_26

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comp(24348..26117)
DNA (1770bp) protein (590aa)
Type II secretion system protein E {ECO:0000313|EMBL:KKR46167.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
Tfp pilus assembly protein PilB; K02652 type IV pilus assembly protein PilB id=5803124 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
secretion system protein E
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_27

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26361..27434
DNA (1074bp) protein (358aa)
C-terminal, D2-small domain, of ClpB protein, ATPase family associated with various cellular activities (AAA) n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIL2_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:KKR46166.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
ATPase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_28

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27642..28895
DNA (1254bp) protein (418aa)
NusA antitermination factor {ECO:0000313|EMBL:KKR31972.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
nusA; transcription elongation factor NusA; K02600 N utilization substance protein A id=5803127 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
nusA; transcription elongation protein NusA
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5524_29
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

28910..29002
DNA (93bp) protein (31aa)
ppa; inorganic pyrophosphatase (EC:3.6.1.1); K01507 inorganic pyrophosphatase [EC:3.6.1.1] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
Displaying 29 items

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