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RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_1

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3..1529
DNA (1527bp) protein (509aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine-tRNA ligase n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWD9_9BACT
Arginine-tRNA ligase {ECO:0000313|EMBL:KKR45719.1}; Flags: Fragment;; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_2

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1856..5182
DNA (3327bp) protein (1109aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035E22E6
Isoleucine-tRNA ligase {ECO:0000313|EMBL:KKR32105.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
isoleucyl-tRNA synthetase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_3

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5253..5837
DNA (585bp) protein (195aa)
Repair protein RecO protein {ECO:0000313|EMBL:KKR32106.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) id=5803284 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
recO; DNA repair protein RecO
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_4

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6176..6403
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037EE6AF
Uncharacterized protein {ECO:0000313|EMBL:KKR32107.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_5
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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6654..7301
DNA (648bp) protein (216aa)
hypothetical protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
hypothetical protein id=9063 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_6

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comp(7774..8121)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZP10_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKR32109.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_7
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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8165..9124
DNA (960bp) protein (320aa)
RNA-directed DNA polymerase Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RNA-directed DNA polymerase id=4790029 bin=GWC2_OD1_43_27 species=Eubacterium ventriosum genus=Eubacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Retron-type reverse transcriptase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_8
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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9275..11170
DNA (1896bp) protein (632aa)
transmembrane_regions Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
transmembrane_regions id=5803285 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_9
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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11195..12511
DNA (1317bp) protein (439aa)
grs1; glycyl-tRNA synthetase (class II); K01880 glycyl-tRNA synthetase [EC:6.1.1.14] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
id=5227237 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
glycyl-tRNA synthetase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_10
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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12508..12735
DNA (228bp) protein (76aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_11
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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12732..12962
DNA (231bp) protein (77aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_12

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12962..14230
DNA (1269bp) protein (423aa)
Peptidase M16 domain protein {ECO:0000313|EMBL:KKR45730.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
M16 family peptidase id=5227236 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
peptidase M16 domain-containing protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_13

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14254..15324
DNA (1071bp) protein (357aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR32116.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
hypothetical protein id=5803290 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_14
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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15374..16750
DNA (1377bp) protein (459aa)
metG; methionyl-tRNA synthetase (EC:6.1.1.10) Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] id=5803291 bin=OD1_GWC2_34_28 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
methionyl-tRNA synthetase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_15
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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16788..17645
DNA (858bp) protein (286aa)
hydrolase, TatD family; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
sec-independent protein translocase protein (EC:3.1.21.-); K03424 TatD DNase family protein [EC:3.1.21.-] id=5803293 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hydrolase, TatD family
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_16
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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17690..18169
DNA (480bp) protein (160aa)
seg Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
seg id=5227232 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_17
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

18303..18743
DNA (441bp) protein (147aa)
ssb; single-strand binding protein family; K03111 single-strand DNA-binding protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
Single-stranded DNA-binding protein id=5227231 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
ssb; single-strand binding protein family
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_18
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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18779..19024
DNA (246bp) protein (82aa)
rpsR; 30S ribosomal protein S18 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 id=5803296 bin=OD1_GWC2_34_28 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rpsR; 30S ribosomal protein S18
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_19
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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comp(19259..19846)
DNA (588bp) protein (196aa)
paaX; phenylacetic acid degradation operon negative regulatory protein; K02616 phenylacetic acid degradation operon negative regulatory protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
ORF13 id=3305467 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
paaX; phenylacetic acid degradation operon negative regulatory protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_5321_20
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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comp(19943..20512)
DNA (570bp) protein (190aa)
translation elongation factor P Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
efp; elongation factor P; K02356 elongation factor P id=5803300 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
translation elongation factor P
Displaying 20 items

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