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RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_1
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(193..1896)
DNA (1704bp) protein (568aa)
Integral membrane protein MviN n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVM2_9BACT
Integral membrane protein MviN {ECO:0000313|EMBL:KKS10820.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
putative peptidoglycan lipid II flippase MurJ
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_2
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(1906..4023)
DNA (2118bp) protein (706aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS10821.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
Tfp pilus assembly protein PilF id=5226970 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_3
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(4083..4589)
DNA (507bp) protein (169aa)
id=4414152 Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
id=4414152 bin=GWC2_OP3-like_45_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_4
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(4593..5897)
DNA (1305bp) protein (435aa)
id=4414151 Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
id=4414151 bin=GWC2_OP3-like_45_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_5
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

comp(5916..6254)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Geobacillus sp. GHH01 RepID=L8A2Z3_9BACI
Uncharacterized protein {ECO:0000313|EMBL:KKS73383.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_6
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(6480..9638)
DNA (3159bp) protein (1053aa)
cell wall surface anchor family protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
hypothetical protein id=5803020 bin=OD1_GWC2_34_28 species=Limnobacter sp. MED105 genus=Limnobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
cell wall surface anchor family protein
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_7

Not on your lists


comp(9729..12791)
DNA (3063bp) protein (1021aa)
leuS; Leucine-tRNA ligase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RAE8_SPISS
Leucine-tRNA ligase {ECO:0000313|EMBL:KKR62727.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_8
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(12797..13777)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AQ70_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_9
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(13781..14368)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z9P7_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_10
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(14371..15309)
DNA (939bp) protein (313aa)
SAM-dependent methyltransferase (EC:2.1.1.64); K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
SAM-dependent methyltransferase (EC:2.1.1.64)
SAM-dependent methyltransferase n=1 Tax=Puniceispirillum marinum (strain IMCC1322) RepID=D5BTP2_PUNMI
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_11
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(15306..16127)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000362D291
GTP-binding protein YchF; K06942 Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
GTP-binding protein YchF
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_12
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(16164..16880)
DNA (717bp) protein (239aa)
endonuclease I Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
endonuclease I id=15189826 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_13
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

16978..17982
DNA (1005bp) protein (335aa)
putative Ribokinase (EC:2.7.1.15) Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
carbohydrate kinase PfkB; K00852 ribokinase [EC:2.7.1.15] id=5803344 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Sugar kinase, ribokinase family
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_trna_3
unknown

Not on your lists

comp(18001..18073)
DNA (73bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_14
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

comp(18317..18994)
DNA (678bp) protein (226aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS73392.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
transmembrane_regions id=5226927 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_15
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(19007..20248)
DNA (1242bp) protein (414aa)
Glycosyltransferase involved in cell wall biogenesis {ECO:0000313|EMBL:KKS10386.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
Glycosyltransferase involved in cell wall biogenesis id=5226926 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Glycosyltransferase involved in cell wall biogenesis
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_16
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(20260..20559)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI0003741DAF
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_17
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

20669..21433
DNA (765bp) protein (255aa)
DsbA oxidoreductase {ECO:0000313|EMBL:KKS73395.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
DsbA oxidoreductase id=4800153 bin=GWC2_OD1_43_27 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
DSBA oxidoreductase
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_18
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

21567..22127
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000368AF0D
Transcriptional regulator, PaaX family {ECO:0000313|EMBL:KKS10129.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
phaN; repressor
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_19
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(22192..23400)
DNA (1209bp) protein (403aa)
RNA polymerase, sigma 38 subunit, RpoS; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
ccl:Clocl_2118 RNA polymerase, sigma 38 subunit, RpoS; K03086 RNA polymerase primary sigma factor id=5227550 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RNA polymerase, sigma 38 subunit, RpoS
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_20
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(23409..25187)
DNA (1779bp) protein (593aa)
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-] id=5803389 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Primase protein {ECO:0000313|EMBL:KKS10131.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
dnaG; DNA primase
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_21

Not on your lists

comp(25205..26164)
DNA (960bp) protein (320aa)
Peptide chain release factor 1 {ECO:0000313|EMBL:KKR62741.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
id=5227040 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
peptide chain release factor 1
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_22
GWB1_OD1_41_6_partial, Parcubacteria, Bacteria

Not on your lists


comp(26164..26382)
DNA (219bp) protein (73aa)
50S ribosomal protein L31 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVU1_9BACT
50S ribosomal protein L31 Tax=GWB1_OD1_41_6_partial
rpmE; protein RpmE
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_23
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(26547..27905)
DNA (1359bp) protein (453aa)
membrane-bound metallopeptidase
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
hypothetical protein id=5227042 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_24
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(27939..28631)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVZ1_9BACT
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_25
GWB1_OD1_41_6_partial, Parcubacteria, Bacteria

Not on your lists

comp(28913..29053)
DNA (141bp) protein (47aa)
Tax=GWB1_OD1_41_6_partial
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_26
GWB1_OD1_41_6_partial, Parcubacteria, Bacteria

Not on your lists

comp(29411..31174)
DNA (1764bp) protein (588aa)
Fe-S protein, lactate dehydrogenase-like protein Tax=GWB1_OD1_41_6_partial
Oxidoreductase (Fragment) id=3309811 bin=GWA1_ZB2_49_26 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Oxidoreductase
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_27
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

comp(31184..32230)
DNA (1047bp) protein (349aa)
alf1; Fructose-bisphosphate aldolase class I (EC:4.1.2.13)
Fructose-bisphosphate aldolase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KAI7_STEMA
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:KKS71924.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_28
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(32242..33681)
DNA (1440bp) protein (480aa)
glutamyl-tRNA(Gln) amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
id=5227058 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
glutamyl-tRNA(Gln) amidotransferase subunit B
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_874_29

Not on your lists

comp(33706..34368)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F799_9BACT
Putative ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KKR62749.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
ABC transporter ATP-binding protein
Displaying items 1-30 of 65 in total

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