ggKbase home page

RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_1

Not on your lists

comp(93..377)
DNA (285bp) protein (95aa)
Translation initiation factor IF-1 {ECO:0000313|EMBL:KKR61773.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
Translation initiation factor IF-1 id=5227103 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_2
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(446..1123)
DNA (678bp) protein (226aa)
hypothetical protein; K07491 putative transposase Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
Putative uncharacterized protein id=5227359 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_3
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

comp(1250..1666)
DNA (417bp) protein (139aa)
Type IV pilus assembly protein PilA {ECO:0000313|EMBL:KKS73251.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
Prepilin-type cleavage/methylation protein id=5227294 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
pilin, type IV
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_4
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(1898..2065)
DNA (168bp) protein (56aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_5
RLO_OD1_Nomurabacteria_44_11, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(2070..2225)
DNA (156bp) protein (52aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_44_11_curated
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_6
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

comp(2372..3580)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXW9_9BACT
Type II secretion system F domain protein {ECO:0000313|EMBL:KKS73249.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
type II secretion system F domain-containing protein
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_7
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(3681..4739)
DNA (1059bp) protein (353aa)
Pilus retraction protein PilT n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWN5_9BACT
type IV pilus assembly protein PilT; K02669 twitching motility protein PilT Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
pilT; type IV pilus assembly protein PilT
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_8
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(4861..5268)
DNA (408bp) protein (136aa)
Response regulator receiver protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZB0_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
Two component transcriptional regulator, winged helix
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_9
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(5308..7065)
DNA (1758bp) protein (586aa)
Type II secretion system protein E n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7Q0L4_9BACT
pilB2; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
pilB2; type IV-A pilus assembly ATPase PilB
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_10
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(7068..7607)
DNA (540bp) protein (180aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_11
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(7622..8272)
DNA (651bp) protein (217aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS10324.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
no description id=5803083 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_12
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(8278..8949)
DNA (672bp) protein (224aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS10323.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
transmembrane_regions id=5227303 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_13
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(9095..10243)
DNA (1149bp) protein (383aa)
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
Type IV pilus assembly protein PilM id=5227304 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
pilus assembly protein PilM
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_14
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

10348..11037
DNA (690bp) protein (230aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS10320.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
Putative amidophosphoribosyltransferase id=5227305 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
putative amidophosphoribosyltransferase
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_15
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(11021..12247)
DNA (1227bp) protein (409aa)
hypothetical protein; K03802 cyanophycin synthetase [EC:6.-.-.-] Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
hypothetical protein; K03802 cyanophycin synthetase [EC:6.-.-.-] id=120087 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_16
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(12362..12694)
DNA (333bp) protein (111aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_17
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(12718..13536)
DNA (819bp) protein (273aa)
Integral membrane sensor hybrid histidine kinase {ECO:0000313|EMBL:KKS10317.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
Two-component sensor kinase id=1743936 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
response regulator receiver, CheY-like protein
RIFCSPHIGHO2_02_FULL_OD1_41_150_rifcsphigho2_02_scaffold_7465_18
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(13541..14905)
DNA (1365bp) protein (455aa)
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
Sensor protein resE id=2720430 bin=GWA1_ZB2_49_26 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
integral membrane sensor signal transduction histidine kinase
Displaying 18 items

View Taxonomy