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RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_1
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(186..716)
DNA (531bp) protein (177aa)
Repressor in ring oxydation complex/phenylacetic acid degradation pathway related protein (PaaX) n=1 Tax=uncultured bacterium RepID=K2EYU1_9BACT
paaX; repressor in ring oxydation complex/phenylacetic acid degradation pathway-like protein (paaX); K02616 phenylacetic acid degradation operon negative regulatory protein Tax=RIFCSPLOWO2_02_FULL_SM2
paaX; repressor in ring oxydation complex/phenylacetic acid degradation pathway-like protein (paaX)
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_2
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(865..1593)
DNA (729bp) protein (243aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_3
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

2022..3212
DNA (1191bp) protein (397aa)
translation elongation factor Tu; K02358 elongation factor Tu Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Elongation factor Tu id=3736618 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
translation elongation factor Tu
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_4
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


3215..3550
DNA (336bp) protein (112aa)
30S ribosomal protein S10 n=1 Tax=uncultured bacterium RepID=K2FLV9_9BACT
30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
30S ribosomal protein S10
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_5
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


3703..4251
DNA (549bp) protein (183aa)
50S ribosomal protein L3 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
50S ribosomal protein L3 id=2154534 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
rplC; 50S ribosomal protein L3
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_6
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


4253..4903
DNA (651bp) protein (217aa)
50S ribosomal protein L4 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169340D id=120514 bin=ACD76 species=Paenibacillus larvae genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
50S ribosomal protein L4
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_7
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


5009..5410
DNA (402bp) protein (134aa)
50S ribosomal protein L25; K02892 large subunit ribosomal protein L23 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
50S ribosomal protein L23 id=2824337 bin=GWC1_OD1_38_17 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
50S ribosomal protein L25
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_8
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


5488..6324
DNA (837bp) protein (279aa)
50S ribosomal protein L2 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NHR9_9CLOT
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
50S ribosomal protein L2
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_9
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


6326..6664
DNA (339bp) protein (113aa)
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein id=5801575 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
30S ribosomal protein S19
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_10
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


6671..7231
DNA (561bp) protein (187aa)
50S ribosomal protein L22 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
50S ribosomal protein L22 id=1797374 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
50S ribosomal protein L22
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_11
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


7233..7895
DNA (663bp) protein (221aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GSP0_9ZZZZ
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rpsC; 30S ribosomal protein S3
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_12
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


7905..8318
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=uncultured bacterium RepID=K2F0T2_9BACT
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
50S ribosomal protein L16
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_13
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


8315..8512
DNA (198bp) protein (66aa)
Marine sediment metagenome DNA, contig: S01H4_S06640 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_14
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


8514..8768
DNA (255bp) protein (85aa)
30S ribosomal protein S17 n=1 Tax=uncultured bacterium RepID=K1Y7G5_9BACT
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
30S ribosomal protein S17
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_15
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


8771..9142
DNA (372bp) protein (124aa)
50S ribosomal protein L14 n=1 Tax=uncultured bacterium RepID=K1ZD66_9BACT
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
LSU ribosomal protein L14p (L23e)
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_16
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


9147..9461
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Thermosipho melanesiensis (strain BI429 / DSM 12029) RepID=RL24_THEM4
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
50S ribosomal protein L24
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_17
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


9464..10036
DNA (573bp) protein (191aa)
50S ribosomal protein L5 n=1 Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=RL5_SYNJB
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rplE; 50S ribosomal protein L5
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_18
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


10230..10622
DNA (393bp) protein (131aa)
30S ribosomal protein S8 n=1 Tax=actinobacterium SCGC AAA015-M09 RepID=UPI000361B468
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rpsH; 30S ribosomal protein S8
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_19
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


10634..11182
DNA (549bp) protein (183aa)
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
50S ribosomal protein L6 id=2151955 bin=GWD2_CPR2_39_7 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_CPR2_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D1_39_7
50S ribosomal protein L6
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_20
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


11195..11542
DNA (348bp) protein (116aa)
50S ribosomal protein L18 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=RL18_ROSS1
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rplR; 50S ribosomal protein L18
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_21
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


11545..12033
DNA (489bp) protein (163aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein id=5801562 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_22
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


12026..12484
DNA (459bp) protein (153aa)
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 id=5098142 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
50S ribosomal protein L15
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_23
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


12481..13761
DNA (1281bp) protein (427aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
sti:Sthe_1056 preprotein translocase, SecY subunit; K03076 preprotein translocase subunit SecY id=8851 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
preprotein translocase subunit SecY
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_24
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

13773..14336
DNA (564bp) protein (188aa)
adenylate kinase family protein (EC:2.7.4.3) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
adenylate kinase family protein (EC:2.7.4.3)
Adenylate kinase n=1 Tax=uncultured bacterium RepID=K2BXV9_9BACT
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_25
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

14333..14893
DNA (561bp) protein (187aa)
putative cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Cytidylate kinase n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZR9_9BACT
putative cytidylate kinase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_26
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

14881..15645
DNA (765bp) protein (255aa)
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Methionine aminopeptidase n=2 Tax=Thermotoga RepID=A5IMA5_THEP1
methionine aminopeptidase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_27
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

15713..15841
DNA (129bp) protein (43aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_28
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(15909..16331)
DNA (423bp) protein (141aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_29
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

16438..16599
DNA (162bp) protein (54aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3089_30
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

16600..17157
DNA (558bp) protein (186aa)
UPF0314 protein PSE_4063 n=1 Tax=Pseudovibrio sp. (strain FO-BEG1) RepID=G8PS32_PSEUV
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
Displaying items 1-30 of 39 in total

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