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RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328

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Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_1
GWC1_OD1_37_10, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(3..1343)
DNA (1341bp) protein (447aa)
Recombinase {ECO:0000313|EMBL:KKQ23214.1}; TaxID=1619010 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWC1_37_10.;"
Recombinase id=2720351 bin=GWA1_ZB2_49_26 species=Hippea maritima genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
recombinase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_2
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

1560..2216
DNA (657bp) protein (219aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_3
R_SM2F11_46_14, SM2F11, Bacteria

Not on your lists

comp(2395..2895)
DNA (501bp) protein (167aa)
phosphoribosyltransferase Tax=RIFCSPHIGHO2_01_FULL_SM2F11_46_14_curated
Phosphoribosyl transferase domain protein id=1263490 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
comFC; competence protein ComFC
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_4
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(3140..5623)
DNA (2484bp) protein (828aa)
ATPase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VH30_CLOSH
clpB1; chaperone protein ClpB Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
clpB1; chaperone protein ClpB
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_5
R_SM2F11_46_14, SM2F11, Bacteria

Not on your lists

5825..6319
DNA (495bp) protein (165aa)
Recombination protein RecX n=1 Tax=Lactobacillus plantarum 2025 RepID=V7Z3M4_LACPN
regulatory protein RecX; K03565 regulatory protein Tax=RIFCSPHIGHO2_01_FULL_SM2F11_46_14_curated
recX; recombination regulator RecX
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_6
R_SM2F11_46_14, SM2F11, Bacteria

Not on your lists

comp(6316..7221)
DNA (906bp) protein (302aa)
HtpX-2 peptidase; K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=RIFCSPHIGHO2_01_FULL_SM2F11_46_14_curated
heat shock protein HtpX (EC:3.4.24.-)
Protease HtpX homolog n=1 Tax=uncultured bacterium RepID=K2A3A0_9BACT
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_7
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(7221..7778)
DNA (558bp) protein (186aa)
LemA-like protein n=1 Tax=uncultured bacterium RepID=K2FRG5_9BACT
LemA family protein; K03744 LemA protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
membrane protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_8
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

7951..8232
DNA (282bp) protein (94aa)
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C (EC:6.3.5.6 6.3.5.7); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] id=95886 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_9
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

8235..9722
DNA (1488bp) protein (496aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDH5_THET1
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_10
R_SM2F11_48_13, SM2F11, Bacteria

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9725..11197
DNA (1473bp) protein (491aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=uncultured bacterium RepID=K2EBM6_9BACT
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_11
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(11174..12061)
DNA (888bp) protein (296aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
tRNA dimethylallyltransferase n=1 Tax=Bacillus smithii 7_3_47FAA RepID=G9QGV2_9BACI
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_12
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

12218..12943
DNA (726bp) protein (242aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_13
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(13084..14829)
DNA (1746bp) protein (582aa)
thrZ; threonyl-tRNA synthetase (EC:6.1.1.3) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
cpi:Cpin_3742 thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] id=53246 bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
thrZ; threonyl-tRNA synthetase (EC:6.1.1.3)
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_14
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(14826..18344)
DNA (3519bp) protein (1173aa)
DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
DNA polymerase III subunit alpha (EC:2.7.7.7)
hypothetical protein id=5801863 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_15
R_SM2F11_48_13, SM2F11, Bacteria

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18441..19286
DNA (846bp) protein (282aa)
transmembrane_regions 16..38 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
transmembrane_regions 16..38 id=8597 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_16
R_SM2F11_48_13, SM2F11, Bacteria

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19283..20386
DNA (1104bp) protein (368aa)
Rod shape-determining protein RodA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNZ7_9FIRM id=96197 bin=ACD63 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
rodA-1; rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rodA-1; rod shape-determining protein RodA
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_17
R_SM2F11_48_13, SM2F11, Bacteria

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20442..20798
DNA (357bp) protein (119aa)
id=2739404 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
id=2739404 bin=GWC1_TM7_41_48 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_TM7_41_48 organism_group=TM7
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_18
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


20867..21562
DNA (696bp) protein (232aa)
ctc; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
50S ribosomal protein L25 id=2130230 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
ctc; 50S ribosomal protein L25
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_19
R_SM2F11_48_13, SM2F11, Bacteria

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21568..22566
DNA (999bp) protein (333aa)
conserved exported protein of unknown function Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Putative uncharacterized protein id=2439417 bin=GWC2_TM7_44_17 species=RAAC3_TM7 genus=RAAC3_TM7 taxon_order=RAAC3_TM7 taxon_class=RAAC3_TM7 phylum=TM7 tax=GWC2_TM7_44_17 organism_group=TM7 organism_desc=Genome has competed version
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_20
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

22651..23964
DNA (1314bp) protein (438aa)
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
adenylosuccinate synthetase (EC:6.3.4.4)
adenylosuccinate synthetase n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B3C57B
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_21
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

23925..24113
DNA (189bp) protein (63aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_22
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(24068..25594)
DNA (1527bp) protein (509aa)
guaA; GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2EMJ8_9FIRM
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_23
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(25669..26655)
DNA (987bp) protein (329aa)
adenosine deaminase (EC:3.5.4.4); K01488 adenosine deaminase [EC:3.5.4.4] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Adenosine deaminase id=3486158 bin=GWA1_ZB2_49_26 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
adenosine deaminase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_24
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(26721..27779)
DNA (1059bp) protein (353aa)
IMP dehydrogenase/GMP reductase; K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
inosine 5''''-monophosphate dehydrogenase n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B57835
inosine 5'-monophosphate dehydrogenase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_25
R_SM2F11_48_13, SM2F11, Bacteria

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comp(27758..28630)
DNA (873bp) protein (291aa)
HemK family modification methylase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
HemK family modification methylase; K02493 methyltransferase [EC:2.1.1.-] id=16942 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
HemK family modification methylase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_26
R_SM2F11_48_13, SM2F11, Bacteria

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comp(28627..29676)
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI00036E4198
peptide chain release factor 1; K02835 peptide chain release factor 1 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
peptide chain release factor 1
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_27
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(29733..30020)
DNA (288bp) protein (96aa)
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rpmE; ribosomal protein L31; K02909 large subunit ribosomal protein L31 id=99420 bin=ACD66 species=ACD66 genus=ACD66 taxon_order=ACD66 taxon_class=ACD66 phylum=OD1 tax=ACD66 organism_group=OD1 (Parcubacteria) organism_desc=OD1
50S ribosomal protein L31
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_28
R_SM2F11_48_13, SM2F11, Bacteria

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30101..30466
DNA (366bp) protein (122aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_29
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


31008..31772
DNA (765bp) protein (255aa)
small subunit ribosomal protein S2 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
ribosomal protein S2; K02967 small subunit ribosomal protein S2 id=96591 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
small subunit ribosomal protein S2
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_2328_30
R_SM2F11_48_13, SM2F11, Bacteria

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31772..32374
DNA (603bp) protein (201aa)
Elongation factor Ts n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PAD9_DEFDS
tsf; translation elongation factor Ts; K02357 elongation factor Ts Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
tsf; translation elongation factor Ts
Displaying items 1-30 of 54 in total

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