ggKbase home page

RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_23235

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_23235_1
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

248..511
DNA (264bp) protein (88aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_23235_2
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(1007..1543)
DNA (537bp) protein (179aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCC9_GEOUR
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_23235_3
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

1724..1948
DNA (225bp) protein (75aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_23235_trna_2
unknown

Not on your lists

comp(1880..1952)
DNA (73bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_23235_trna_1
unknown

Not on your lists

comp(1966..2038)
DNA (73bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_23235_4
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(2039..2704)
DNA (666bp) protein (222aa)
id=4469863 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
id=4469863 bin=GWC2_OP3-like_45_7 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_23235_5
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

2779..3441
DNA (663bp) protein (221aa)
rnhB; ribonuclease HII RnhB (EC:3.1.26.4) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rnhB; ribonuclease HII RnhB (EC:3.1.26.4)
ribonuclease HII n=1 Tax=Desulfobacter curvatus RepID=UPI00037A18A5
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_23235_6
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

3516..4004
DNA (489bp) protein (163aa)
RNA polymerase sigma factor SigW Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RNA polymerase sigma factor, sigma-70 family id=15190917 bin=GWC1_OP11_49_16_COMPLETE species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
RNA polymerase sigma factor SigW
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_23235_7
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

4007..5065
DNA (1059bp) protein (353aa)
fc32f04, wu:fc32f04; si:ch211-116m6.3 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
fc32f04, wu:fc32f04; si:ch211-116m6.3 id=5802133 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_23235_8
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

5200..6528
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B37C98
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_23235_9
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(6520..7851)
DNA (1332bp) protein (444aa)
Orn/DAP/Arg decarboxylase 2; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Orn/DAP/Arg decarboxylase 2 id=2928855 bin=GWF2_OP3_38_59 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
Orn/DAP/Arg decarboxylase 2
Displaying 11 items

View Taxonomy