ggKbase home page

RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_1
GWE2_OD1_40_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

1..237
DNA (237bp) protein (79aa)
Recombinase {ECO:0000313|EMBL:KKR36257.1}; TaxID=1618766 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWE2_40_10.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_2

Not on your lists

comp(485..2083)
DNA (1599bp) protein (533aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39897.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
coiled-coil 226..247 id=130557 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
coiled-coil 226..247 id=130557 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_3
GWF2_OD1_38_8, Parcubacteria, Bacteria

Not on your lists

comp(2105..2278)
DNA (174bp) protein (58aa)
Tax=GWF2_OD1_38_8
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_4
GWC2_OD1_39_41, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

2656..2949
DNA (294bp) protein (98aa)
Tax=GWC2_OD1_39_41
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_5
GWB1_OD1_40_11, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

2921..3742
DNA (822bp) protein (274aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR38396.1}; TaxID=1618743 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_6

Not on your lists

3952..4986
DNA (1035bp) protein (345aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39894.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_7

Not on your lists

5044..5631
DNA (588bp) protein (196aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39893.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_8
GWE2_OD1_40_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

5618..7258
DNA (1641bp) protein (547aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR36546.1}; TaxID=1618766 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWE2_40_10.;"
Uncharacterized protein {ECO:0000313|EMBL:KKR36546.1}; TaxID=1618766 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWE2_40_10.;"
resolvase domain-containing protein id=5096803 bin=PER_GWF2_39_17 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=PER_GWF2_39_17 organism_group=PER (Peregrinibacteria)
resolvase domain-containing protein id=5096803 bin=PER_GWF2_39_17 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=PER_GWF2_39_17 organism_group=PER (Peregrinibacteria)
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_9

Not on your lists

7694..8182
DNA (489bp) protein (163aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39891.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
Uncharacterized protein {ECO:0000313|EMBL:KKR39891.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
seg id=5802686 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
seg id=5802686 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_10
R_OD1_Nomurabacteria_40_18, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

8441..8617
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FNW6_9BACT
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FNW6_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_40_18_curated
Uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_40_18_curated
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_11

Not on your lists

comp(8946..9668)
DNA (723bp) protein (241aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39890.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_12

Not on your lists

9852..10742
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FLG0_FLAJ1
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FLG0_FLAJ1
Uncharacterized protein {ECO:0000313|EMBL:KKR39889.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
Uncharacterized protein {ECO:0000313|EMBL:KKR39889.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_13

Not on your lists

10739..10891
DNA (153bp) protein (51aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39888.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_14

Not on your lists

10833..11195
DNA (363bp) protein (121aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39887.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_15

Not on your lists

11176..11442
DNA (267bp) protein (89aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39886.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_16

Not on your lists

11469..11636
DNA (168bp) protein (56aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39885.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_17

Not on your lists

11639..11863
DNA (225bp) protein (75aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39884.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_18

Not on your lists

11867..12043
DNA (177bp) protein (59aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39883.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_19

Not on your lists

12122..12442
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L6N3_9BACT
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L6N3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKR39882.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
Uncharacterized protein {ECO:0000313|EMBL:KKR39882.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_20
GWB1_OD1_40_11, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

12465..13226
DNA (762bp) protein (254aa)
beta-lactamase n=1 Tax=Gillisia marina RepID=UPI00029B2AA6
beta-lactamase n=1 Tax=Gillisia marina RepID=UPI00029B2AA6
Uncharacterized protein {ECO:0000313|EMBL:KKR38382.1}; TaxID=1618743 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_40_11.;"
Uncharacterized protein {ECO:0000313|EMBL:KKR38382.1}; TaxID=1618743 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_21
Parcubacteria bacterium GW2011_GWF1_40_5, Parcubacteria, Bacteria

Not on your lists

13395..14423
DNA (1029bp) protein (343aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR66627.1}; TaxID=1618955 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF1_40_5.;"
Uncharacterized protein {ECO:0000313|EMBL:KKR66627.1}; TaxID=1618955 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF1_40_5.;"
hypothetical protein id=14627173 bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein id=14627173 bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_22

Not on your lists

14473..15081
DNA (609bp) protein (203aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39879.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
Uncharacterized protein {ECO:0000313|EMBL:KKR39879.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
DedA family protein id=5097723 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
DedA family protein id=5097723 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_23

Not on your lists

15094..15492
DNA (399bp) protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39878.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
Uncharacterized protein {ECO:0000313|EMBL:KKR39878.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
Ribosomal protein S30Ae/sigma 54 modulation protein id=5227162 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Ribosomal protein S30Ae/sigma 54 modulation protein id=5227162 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_24
GWB1_OD1_40_11, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(15489..16325)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PW56_9BACT
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PW56_9BACT
Methionyl-tRNA formyltransferase {ECO:0000313|EMBL:KKR38378.1}; TaxID=1618743 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_40_11.;"
Methionyl-tRNA formyltransferase {ECO:0000313|EMBL:KKR38378.1}; TaxID=1618743 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_25
GWB1_OD1_40_11, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(16331..16852)
DNA (522bp) protein (174aa)
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88] id=5227160 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88] id=5227160 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Peptide deformylase {ECO:0000313|EMBL:KKR38377.1}; TaxID=1618743 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_40_11.;"
Peptide deformylase {ECO:0000313|EMBL:KKR38377.1}; TaxID=1618743 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_26
GWA1_OD1_40_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(16866..18176)
DNA (1311bp) protein (437aa)
Histidine-tRNA ligase {ECO:0000313|EMBL:KKR74288.1}; TaxID=1618730 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA1_40_8.;"
Histidine-tRNA ligase {ECO:0000313|EMBL:KKR74288.1}; TaxID=1618730 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA1_40_8.;"
id=5227159 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
id=5227159 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_27
GWE2_OD1_40_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(18181..18732)
DNA (552bp) protein (184aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] id=5803493 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] id=5803493 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Signal peptidase I {ECO:0000313|EMBL:KKR36528.1}; TaxID=1618766 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWE2_40_10.;"
Signal peptidase I {ECO:0000313|EMBL:KKR36528.1}; TaxID=1618766 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWE2_40_10.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_28
GWE2_OD1_40_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

18794..19321
DNA (528bp) protein (176aa)
Aminoacyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] id=5803533 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Aminoacyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] id=5803533 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
aminoacyl-tRNA hydrolase (EC:3.1.1.29)
aminoacyl-tRNA hydrolase (EC:3.1.1.29)
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_29

Not on your lists

comp(19318..19512)
DNA (195bp) protein (65aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR39872.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_5432_30

Not on your lists

comp(19542..22796)
DNA (3255bp) protein (1085aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III subunit alpha (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXJ6_9BACT
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXJ6_9BACT
Displaying items 1-30 of 41 in total

View Taxonomy