ggKbase home page

RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_17974

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_17974_1
Parcubacteria bacterium GW2011_GWF1_40_5, Parcubacteria, Bacteria

Not on your lists

1..405
DNA (405bp) protein (135aa)
Recombinase {ECO:0000313|EMBL:KKR66558.1}; TaxID=1618955 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF1_40_5.;"
Recombinase {ECO:0000313|EMBL:KKR66558.1}; TaxID=1618955 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF1_40_5.;"
resolvase domain-containing protein id=120799 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
resolvase domain-containing protein id=120799 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_17974_2

Not on your lists

550..1191
DNA (642bp) protein (214aa)
Metal dependent phosphohydrolase {ECO:0000313|EMBL:KKR40011.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
Metal dependent phosphohydrolase {ECO:0000313|EMBL:KKR40011.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
metal dependent phosphohydrolase
metal dependent phosphohydrolase
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_17974_3
GWC2_OD1_39_41, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

1294..3201
DNA (1908bp) protein (636aa)
GTP-binding protein TypA/BipA n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7Q032_9BACT
GTP-binding protein TypA/BipA n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7Q032_9BACT
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:KKR20865.1}; TaxID=1618754 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWC2_39_41.;"
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:KKR20865.1}; TaxID=1618754 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWC2_39_41.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_17974_4
Parcubacteria bacterium GW2011_GWF1_40_5, Parcubacteria, Bacteria

Not on your lists

3220..4248
DNA (1029bp) protein (343aa)
RNA polymerase sigma factor {ECO:0000313|EMBL:KKR66561.1}; TaxID=1618955 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF1_40_5.;"
RNA polymerase sigma factor {ECO:0000313|EMBL:KKR66561.1}; TaxID=1618955 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF1_40_5.;"
coiled-coil id=5227114 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
coiled-coil id=5227114 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_17974_5

Not on your lists

comp(4245..4436)
DNA (192bp) protein (64aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ26966.1}; TaxID=1618863 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_37_13.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_17974_6

Not on your lists

4493..5827
DNA (1335bp) protein (445aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKR40014.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
Uncharacterized protein {ECO:0000313|EMBL:KKR40014.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
transmembrane_regions id=5227112 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_17974_7

Not on your lists

5842..6747
DNA (906bp) protein (302aa)
Aminodeoxychorismate lyase {ECO:0000313|EMBL:KKR40015.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
Aminodeoxychorismate lyase {ECO:0000313|EMBL:KKR40015.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
Aminodeoxychorismate lyase id=5227111 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Aminodeoxychorismate lyase id=5227111 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_17974_8
GWB1_OD1_40_11, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

6823..7350
DNA (528bp) protein (176aa)
Exonuclease RNase T and DNA polymerase III n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LN23_HALO1
Exonuclease RNase T and DNA polymerase III n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LN23_HALO1
Exonuclease RNase T and DNA polymerase III {ECO:0000313|EMBL:KKR38818.1}; TaxID=1618743 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_40_11.;"
Exonuclease RNase T and DNA polymerase III {ECO:0000313|EMBL:KKR38818.1}; TaxID=1618743 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_17974_9

Not on your lists

7468..8592
DNA (1125bp) protein (375aa)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PYS3_9BACT
tRNA-specific 2-thiouridylase MnmA n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PYS3_9BACT
tRNA-specific 2-thiouridylase MnmA {ECO:0000313|EMBL:KKR40017.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
tRNA-specific 2-thiouridylase MnmA {ECO:0000313|EMBL:KKR40017.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_17974_10

Not on your lists

8617..9090
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXC1_9BACT
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXC1_9BACT
Magnesium MgtC family transporter {ECO:0000313|EMBL:KKR40018.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
Magnesium MgtC family transporter {ECO:0000313|EMBL:KKR40018.1}; TaxID=1618902 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_11.;"
RIFCSPHIGHO2_12_FULL_OD1_40_77_rifcsphigho2_12_scaffold_17974_11

Not on your lists


9099..9746
DNA (648bp) protein (216aa)
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=5803401 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=5803401 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
alanyl-tRNA synthetase (EC:6.1.1.7)
alanyl-tRNA synthetase (EC:6.1.1.7)
Displaying 11 items

View Taxonomy