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RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_38098

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_38098_1
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

2..670
DNA (669bp) protein (223aa)
Homing endonuclease LAGLIDADG/HNH Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Homing endonuclease LAGLIDADG/HNH Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
ORF142 id=4838941 bin=GWC2_OD1_43_27 species=unknown genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
ORF142 id=4838941 bin=GWC2_OD1_43_27 species=unknown genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_38098_2
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

1611..2057
DNA (447bp) protein (149aa)
site-specific DNA endonuclease Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
site-specific DNA endonuclease Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Homing endonuclease id=4838938 bin=GWC2_OD1_43_27 species=Synechococcus sp. C9 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Homing endonuclease id=4838938 bin=GWC2_OD1_43_27 species=Synechococcus sp. C9 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_38098_3
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

2420..2899
DNA (480bp) protein (160aa)
site-specific DNA endonuclease Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
site-specific DNA endonuclease Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Homing endonuclease id=2722907 bin=GWC1_OD1_38_17 species=Synechococcus sp. C9 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Homing endonuclease id=2722907 bin=GWC1_OD1_38_17 species=Synechococcus sp. C9 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_38098_4
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

3523..4296
DNA (774bp) protein (258aa)
transmembrane_regions 10..32 Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
transmembrane_regions 10..32 Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
transmembrane_regions 10..32 id=2547 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
transmembrane_regions 10..32 id=2547 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_38098_5
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

4300..5373
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1XT47_9BACT
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1XT47_9BACT
rod shape-determining protein; K05837 rod shape determining protein RodA Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
rod shape-determining protein; K05837 rod shape determining protein RodA Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_38098_6
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

5410..6390
DNA (981bp) protein (327aa)
periplasmic solute-binding protein; K07082 UPF0755 protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
periplasmic solute-binding protein; K07082 UPF0755 protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
hypothetical protein; K07082 UPF0755 protein id=15190264 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
hypothetical protein; K07082 UPF0755 protein id=15190264 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_38098_7
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

6474..9596
DNA (3123bp) protein (1041aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] id=15190265 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] id=15190265 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
Displaying 7 items

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