ggKbase home page

RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_1
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

257..2080
DNA (1824bp) protein (608aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_2
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

2074..3468
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ART7_PELPD
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_3
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

3527..5698
DNA (2172bp) protein (724aa)
PDK repeat-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJQ1_SINAD
PDK repeat-containing protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
PDK repeat-containing protein
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_4
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

5692..6987
DNA (1296bp) protein (432aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_5
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

7100..7375
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2D9P5_9BACT
Uncharacterized protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_6
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

7773..8039
DNA (267bp) protein (89aa)
RelB Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
RelB id=43420 bin=ACD38 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_7
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

8040..8297
DNA (258bp) protein (86aa)
plasmid stabilization system protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
RelE-like id=5174 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
plasmid stabilization system protein
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_8
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

8382..10580
DNA (2199bp) protein (733aa)
PDK repeat-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJQ1_SINAD
PDK repeat-containing protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
PDK repeat-containing protein
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_9
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

10574..11923
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ART7_PELPD
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_10
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

12088..12363
DNA (276bp) protein (92aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
Putative uncharacterized protein (Fragment) id=1807404 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_11
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

12368..12646
DNA (279bp) protein (93aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
Putative uncharacterized protein id=1807406 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_12
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

comp(12674..12916)
DNA (243bp) protein (81aa)
id=3423635 Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
id=3423635 bin=GWA1_ZB2_49_26 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_13
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

comp(12916..13128)
DNA (213bp) protein (71aa)
id=3423636 Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
id=3423636 bin=GWA1_ZB2_49_26 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_14
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

comp(13346..13930)
DNA (585bp) protein (195aa)
superoxide dismutase (Mn) (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
superoxide dismutase (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] id=5085552 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
superoxide dismutase (Mn) (EC:1.15.1.1)
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_15
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

14149..15666
DNA (1518bp) protein (506aa)
Ribonuclease Y n=1 Tax=uncultured bacterium RepID=K1Z3X7_9BACT
2,3 cyclic-nucleotide 2-phosphodiesterase; K06950 uncharacterized protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
2,3 cyclic-nucleotide 2-phosphodiesterase
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_16
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

15744..16559
DNA (816bp) protein (272aa)
metallophosphoesterase, MG_246/BB_0505 family Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
Metallophosphoesterase, MG_246/BB_0505 family id=3506548 bin=GWC1_OD1_38_17 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
metallophosphoesterase, MG_246/BB_0505 family
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_17
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

16646..17182
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=candidate division OD1 bacterium SCGC AAA011-J16 RepID=UPI00036DDD1D
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
type 11 methyltransferase
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_18
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

17276..17662
DNA (387bp) protein (129aa)
id=15189308 Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
id=15189308 bin=GWE1_Berkelbacteria_39_12 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_19
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

17707..18075
DNA (369bp) protein (123aa)
UPF0102 protein Mahau_1065 n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A2T3_MAHA5
hypothetical protein; K07460 putative endonuclease Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_20
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

18225..19346
DNA (1122bp) protein (374aa)
NusA antitermination factor; K02600 N utilization substance protein A Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
cth:Cthe_0994 NusA antitermination factor; K02600 N utilization substance protein A id=88597 bin=ACD5 species=ACD5 genus=ACD5 taxon_order=ACD5 taxon_class=ACD5 phylum=OD1 tax=ACD5 organism_group=OD1-i organism_desc=OD1-i
NusA antitermination factor
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_21
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

19444..20049
DNA (606bp) protein (202aa)
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit id=1263231 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_22
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

20135..20491
DNA (357bp) protein (119aa)
S23 ribosomal protein n=1 Tax=uncultured bacterium RepID=K2A410_9BACT
S23 ribosomal protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
S23 ribosomal protein
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_23
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

20716..20895
DNA (180bp) protein (60aa)
Transcriptional regulator, MerR family n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1N3_DEHLB id=1241473 bin=RBG2 species=Dehalogenimonas lykanthroporepellens genus=Dehalogenimonas taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
hypothetical protein
Transcriptional regulator, MerR family Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
RIFCSPLOWO2_01_FULL_CPR_42_60_rifcsplowo2_01_scaffold_6682_24
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

20892..22838
DNA (1947bp) protein (649aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
procollagen, type XI, alpha id=86942 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
hypothetical protein
Displaying 24 items

View Taxonomy