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RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_1
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

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comp(3..689)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000362D291
GTP-binding protein YchF {ECO:0000313|EMBL:KKS73389.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
GTP-binding protein YchF
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_2
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(726..1442)
DNA (717bp) protein (239aa)
endonuclease I Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
endonuclease I id=15189826 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_3
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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1540..2544
DNA (1005bp) protein (335aa)
putative Ribokinase (EC:2.7.1.15) Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
carbohydrate kinase PfkB; K00852 ribokinase [EC:2.7.1.15] id=5803344 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Sugar kinase, ribokinase family
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_4
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

comp(2879..3556)
DNA (678bp) protein (226aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS73392.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
transmembrane_regions id=5226927 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_5
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(3569..4810)
DNA (1242bp) protein (414aa)
Glycosyltransferase involved in cell wall biogenesis {ECO:0000313|EMBL:KKS10386.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
Glycosyltransferase involved in cell wall biogenesis id=5226926 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Glycosyltransferase involved in cell wall biogenesis
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_6
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(4822..5121)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI0003741DAF
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_7
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

5231..5995
DNA (765bp) protein (255aa)
DsbA oxidoreductase {ECO:0000313|EMBL:KKS73395.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
DsbA oxidoreductase id=4800153 bin=GWC2_OD1_43_27 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
DSBA oxidoreductase
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_8
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

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6129..6689
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000368AF0D
Transcriptional regulator, PaaX family {ECO:0000313|EMBL:KKS10129.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
phaN; repressor
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_9
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(6754..7962)
DNA (1209bp) protein (403aa)
RNA polymerase, sigma 38 subunit, RpoS; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
ccl:Clocl_2118 RNA polymerase, sigma 38 subunit, RpoS; K03086 RNA polymerase primary sigma factor id=5227550 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RNA polymerase, sigma 38 subunit, RpoS
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_10
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(7971..9749)
DNA (1779bp) protein (593aa)
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-] id=5803389 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Primase protein {ECO:0000313|EMBL:KKS10131.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
dnaG; DNA primase
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_11

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comp(9767..10726)
DNA (960bp) protein (320aa)
Peptide chain release factor 1 {ECO:0000313|EMBL:KKR62741.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
id=5227040 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
peptide chain release factor 1
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_12
GWB1_OD1_41_6_partial, Parcubacteria, Bacteria

Not on your lists


comp(10726..10944)
DNA (219bp) protein (73aa)
50S ribosomal protein L31 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVU1_9BACT
50S ribosomal protein L31 Tax=GWB1_OD1_41_6_partial
rpmE; protein RpmE
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_13
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(11109..12467)
DNA (1359bp) protein (453aa)
membrane-bound metallopeptidase
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
hypothetical protein id=5227042 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_14
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(12501..13193)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVZ1_9BACT
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_15
GWB1_OD1_41_6_partial, Parcubacteria, Bacteria

Not on your lists

comp(13475..13615)
DNA (141bp) protein (47aa)
Tax=GWB1_OD1_41_6_partial
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_16
GWB1_OD1_41_6_partial, Parcubacteria, Bacteria

Not on your lists

comp(13973..15736)
DNA (1764bp) protein (588aa)
Fe-S protein, lactate dehydrogenase-like protein Tax=GWB1_OD1_41_6_partial
Oxidoreductase (Fragment) id=3309811 bin=GWA1_ZB2_49_26 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Oxidoreductase
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_17
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

comp(15746..16792)
DNA (1047bp) protein (349aa)
alf1; Fructose-bisphosphate aldolase class I (EC:4.1.2.13)
Fructose-bisphosphate aldolase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KAI7_STEMA
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:KKS71924.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_18
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(16804..18243)
DNA (1440bp) protein (480aa)
glutamyl-tRNA(Gln) amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
id=5227058 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
glutamyl-tRNA(Gln) amidotransferase subunit B
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_19

Not on your lists

comp(18268..18930)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F799_9BACT
Putative ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KKR62749.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
ABC transporter ATP-binding protein
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_20

Not on your lists

comp(18960..20216)
DNA (1257bp) protein (419aa)
ABC-type transport system permease component LolE n=1 Tax=uncultured bacterium CSLC2 RepID=Q8KP05_9BACT
ABC-type transport system permease component LolE {ECO:0000313|EMBL:KKR62750.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
ABC transporter, permease protein
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_21
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(20219..21742)
DNA (1524bp) protein (508aa)
RND family efflux transporter MFP subunit Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein id=15190297 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RND family efflux transporter MFP subunit
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_22
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

comp(21850..22419)
DNA (570bp) protein (190aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS71374.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
Putative regulator id=15189935 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_23
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(22529..23530)
DNA (1002bp) protein (334aa)
putative GTP-binding protein; K03979 GTP-binding protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
obgE; GTPase ObgE; K03979 GTP-binding protein id=5227188 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
putative GTP-binding protein
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_24
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

comp(23606..24535)
DNA (930bp) protein (310aa)
Metal-dependent protein hydrolase {ECO:0000313|EMBL:KKS71376.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
hypothetical protein id=5227189 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
metal-dependent protein hydrolase
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_25
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

comp(24501..25103)
DNA (603bp) protein (201aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS71377.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
hypothetical protein id=2807 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_26
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(25119..25577)
DNA (459bp) protein (153aa)
hypothetical protein; K09117 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
Uncharacterized protein id=5227191 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_27
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

25762..26478
DNA (717bp) protein (239aa)
Exonuclease RNase T and DNA polymerase III Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
Exonuclease RNase T and DNA polymerase III id=5227192 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Exonuclease RNase T and DNA polymerase III
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_28

Not on your lists

26828..27874
DNA (1047bp) protein (349aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR62759.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
Putative DNA recombination protein id=5227193 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_29
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(28212..29204)
DNA (993bp) protein (331aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2BS73_9BACT
recombinase Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
recombinase
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_2400_30
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

29572..29841
DNA (270bp) protein (90aa)
Marine sediment metagenome DNA, contig: S06H3_L00348 Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
Displaying 30 items

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