ggKbase home page

RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_41467

Search features with annotation key words

Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_41467_1

Not on your lists

comp(256..573)
DNA (318bp) protein (106aa)
Glycine-rich RNA-binding protein GRP1A {ECO:0000313|EMBL:KKR60879.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
RNA-binding proteins (RRM domain) id=5802739 bin=PER_GWA2_38_35 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RNP-1 like RNA-binding protein
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_41467_2
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(766..4401)
DNA (3636bp) protein (1212aa)
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
DNA-directed RNA polymerase subunit beta n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVH9_9BACT
DNA-directed RNA polymerase subunit beta'
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_41467_3
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(4413..4982)
DNA (570bp) protein (190aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
hypothetical protein id=4965037 bin=GWA2_CPR4_42_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_41467_4
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(4984..5826)
DNA (843bp) protein (281aa)
dinD; DNA-damage-inducible protein d; K14623 DNA-damage-inducible protein D Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
DNA-damage-inducible protein, part of SOS response id=1987435 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
dinD; DNA-damage-inducible protein d
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_41467_5

Not on your lists

comp(5826..9023)
DNA (3198bp) protein (1066aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKR60875.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
id=5226921 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_41467_6

Not on your lists

comp(9330..9935)
DNA (606bp) protein (202aa)
Repressor in ring oxydation complex/phenylacetic acid degradation pathway related protein (PaaX) n=1 Tax=uncultured bacterium RepID=K2EYU1_9BACT
Transcriptional regulator, PaaX family {ECO:0000313|EMBL:KKR60874.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
PaaX family transcriptional regulator
Displaying 6 items

View Taxonomy